Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.9e-113 412.5 211 100.0
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.9e-100 369.4 198 96.0
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.4e-95 353.2 191 96.3
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 3.6e-80 302.0 191 86.4
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 1.3e-64 250.4 193 72.5
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 2.9e-61 239.2 192 69.8
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 3.9e-50 202.2 208 61.1
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 1.4e-47 193.7 202 60.4
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 5.7e-41 171.8 141 70.2
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 1.2e-38 164.1 208 54.8
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 3.6e-35 152.5 203 54.2
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 6.7e-34 148.3 202 53.5
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 1.5e-33 147.1 203 53.2
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 5.7e-33 145.2 201 49.8
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 1.3e-32 144.1 201 49.8
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 2.2e-32 143.3 202 50.0
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 2.2e-32 143.3 207 49.3
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 4.5e-30 135.6 201 51.2
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 5.9e-30 135.2 192 52.6
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 1.0e-29 134.4 205 49.8
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 1.0e-29 134.4 198 45.5
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 1.0e-29 134.4 197 48.2
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.9e-29 132.9 192 52.1
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.8e-29 132.5 192 52.1
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 5.0e-29 132.1 199 49.2
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 8.5e-29 131.3 195 47.7
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 8.5e-29 131.3 189 51.3
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 1.4e-28 130.6 190 48.4
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 1.9e-28 130.2 202 47.5
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 3.2e-28 129.4 210 48.6
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 7.2e-28 128.3 193 49.7
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 9.4e-28 127.9 197 47.2
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 1.2e-27 127.5 194 47.9
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 7.9e-27 124.8 190 44.2
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 1.4e-26 124.0 198 47.0
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 5.1e-26 122.1 198 46.0
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 5.1e-26 122.1 185 44.9
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 3.3e-25 119.4 208 45.2
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 5.7e-25 118.6 187 46.0
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 7.4e-25 118.2 206 41.7
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 1.3e-24 117.5 213 44.6
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 1.3e-24 117.5 213 44.6
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 1.7e-24 117.1 238 39.9
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 2.2e-24 116.7 195 44.1
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 2.8e-24 116.3 188 42.0
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 3.7e-24 115.9 228 39.9
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 4.8e-24 115.5 189 46.0
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 4.8e-24 115.5 196 45.4
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 4.8e-24 115.5 179 44.7
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 6.3e-24 115.2 194 43.8
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 6.3e-24 115.2 161 49.1
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 8.2e-24 114.8 215 45.1
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 1.4e-23 114.0 194 46.4
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 1.4e-23 114.0 206 43.7
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 3.1e-23 112.8 183 44.3
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.1e-23 112.8 143 55.2
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 4.1e-23 112.5 194 46.4
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 4.1e-23 112.5 206 40.3
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 4.1e-23 112.5 195 44.6
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.1e-23 112.5 185 42.7
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 4.1e-23 112.5 206 41.3
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 9.1e-23 111.3 200 44.0
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.5e-22 110.5 227 43.2
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 2.0e-22 110.2 190 45.8
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 4.5e-22 109.0 223 41.7
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 4.5e-22 109.0 205 45.4
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 5.9e-22 108.6 236 41.5
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 5.9e-22 108.6 183 43.2
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 7.7e-22 108.2 190 44.7
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 7.7e-22 108.2 225 41.3
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 1.3e-21 107.5 203 44.3
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.3e-21 107.5 207 42.0
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.9e-21 106.3 185 41.6
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 2.9e-21 106.3 185 41.6
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 3.8e-21 105.9 218 40.8
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 6.5e-21 105.1 202 43.1
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.1e-20 104.4 207 39.6
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 1.5e-20 104.0 185 44.3
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.9e-20 103.6 187 40.1
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.9e-20 103.6 186 41.4
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 1.9e-20 103.6 185 40.5
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.5e-20 103.2 186 41.4
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 3.2e-20 102.8 211 37.0
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 4.2e-20 102.4 203 42.4
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 4.2e-20 102.4 203 42.4
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 4.2e-20 102.4 218 40.8
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 5.5e-20 102.1 209 42.6
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 1.6e-19 100.5 191 43.5
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.6e-19 100.5 205 43.4
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.1e-19 100.1 193 40.4
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 2.7e-19 99.8 202 38.1
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 8.0e-19 98.2 203 40.4
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 1.4e-18 97.4 210 40.0
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 1.8e-18 97.1 191 39.8
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 2.3e-18 96.7 211 40.3
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 2.3e-18 96.7 196 39.8
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 2.3e-18 96.7 170 42.9
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 6.7e-18 95.1 220 37.7
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 6.7e-18 95.1 215 38.6
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 2.6e-17 93.2 187 38.5
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 3.3e-17 92.8 186 41.4
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 3.3e-17 92.8 141 48.2
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 4.4e-17 92.4 186 38.2
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 4.4e-17 92.4 209 39.7
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 5.7e-17 92.0 200 40.0
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 5.7e-17 92.0 205 42.0
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 9.7e-17 91.3 198 38.4
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 9.7e-17 91.3 90 57.8
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 9.7e-17 91.3 185 41.1
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 1.3e-16 90.9 178 40.4
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 1.3e-16 90.9 192 38.0
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 2.2e-16 90.1 187 41.2
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 2.2e-16 90.1 192 40.1
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 2.8e-16 89.7 204 41.7
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 2.8e-16 89.7 197 39.1
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 6.3e-16 88.6 214 37.4
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.8e-15 87.0 210 37.6
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 7.0e-15 85.1 219 37.9
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 9.1e-15 84.7 204 37.7
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 2.0e-14 83.6 219 37.4
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 2.0e-14 83.6 225 38.7
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 2.6e-14 83.2 133 46.6
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 3.5e-14 82.8 201 37.8
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 1.7e-13 80.5 211 34.6
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 1.7e-13 80.5 195 35.4
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 2.2e-13 80.1 211 35.1
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 2.9e-13 79.7 181 37.0
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 2.9e-13 79.7 161 37.9
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.5e-12 77.4 178 38.2
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 2.5e-12 76.6 220 33.6
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 5.5e-12 75.5 208 32.2
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 5.5e-12 75.5 209 38.3
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 7.2e-12 75.1 206 34.5
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 9.4e-12 74.7 223 33.6
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 9.4e-12 74.7 193 32.1
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 2.7e-11 73.2 74 52.7
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 4.7e-11 72.4 122 41.8
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 6.1e-11 72.0 77 53.2
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 8.0e-11 71.6 100 43.0
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 1.0e-10 71.2 81 51.9
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 1.4e-10 70.9 75 52.0
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 4.0e-10 69.3 160 41.2
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 6.8e-10 68.6 219 32.9
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 6.8e-10 68.6 192 36.5
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 9.8e-09 64.7 61 59.0
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 9.8e-09 64.7 214 35.0
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 9.8e-09 64.7 195 28.7
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 3.7e-08 62.8 116 38.8
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 4.8e-08 62.4 215 29.8
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 6.3e-08 62.0 202 34.2
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 1.6e-06 57.4 65 49.2


User provided reference genes

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