Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 4.0e-69 265.0 170 100.0
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.9e-31 139.8 170 60.0
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 3.6e-30 135.6 170 54.1
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 3.8e-27 125.6 170 53.5
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 4.7e-22 108.6 151 42.4
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 2.0e-20 103.2 164 61.0
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 7.6e-20 101.3 168 49.4
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 7.6e-20 101.3 165 44.2
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 1.7e-19 100.1 165 54.5
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 4.9e-19 98.6 164 43.9
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 8.4e-19 97.8 155 46.5
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 1.4e-18 97.1 164 44.5
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 3.2e-18 95.9 164 39.0
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 4.2e-18 95.5 165 36.4
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 2.1e-17 93.2 166 47.6
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 3.5e-17 92.4 146 49.3
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 4.6e-17 92.0 139 62.6
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 7.8e-17 91.3 165 55.8
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 7.8e-17 91.3 147 43.5
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 7.8e-17 91.3 163 34.4
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 1.0e-16 90.9 164 53.0
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.3e-16 90.5 172 40.7
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 2.3e-16 89.7 167 43.1
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.3e-16 89.7 150 46.0
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 3.9e-16 89.0 174 36.8
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 3.9e-16 89.0 174 36.8
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 5.1e-16 88.6 164 38.4
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 8.7e-16 87.8 160 40.6
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 1.1e-15 87.4 147 53.7
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 1.1e-15 87.4 147 51.7
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.5e-15 87.0 172 40.1
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 1.5e-15 87.0 169 53.3
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 1.5e-15 87.0 166 47.6
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 1.9e-15 86.7 168 47.6
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 2.5e-15 86.3 162 48.8
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 2.5e-15 86.3 162 40.1
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 2.5e-15 86.3 163 55.8
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 2.5e-15 86.3 170 40.6
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 3.3e-15 85.9 163 41.7
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 3.3e-15 85.9 152 36.8
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.3e-15 85.9 150 47.3
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 4.3e-15 85.5 140 62.9
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 4.3e-15 85.5 165 37.0
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.6e-15 85.1 150 47.3
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 7.3e-15 84.7 150 36.7
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 1.3e-14 84.0 164 43.9
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.6e-14 83.6 139 46.0
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 2.8e-14 82.8 154 57.1
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 8.1e-14 81.3 161 44.7
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 1.1e-13 80.9 171 32.2
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 1.1e-13 80.9 164 42.7
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 1.1e-13 80.9 172 51.7
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 1.1e-13 80.9 154 50.0
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 1.8e-13 80.1 162 54.3
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 1.8e-13 80.1 140 38.6
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 2.4e-13 79.7 169 46.7
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 2.4e-13 79.7 168 51.2
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 3.1e-13 79.3 168 38.1
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 3.1e-13 79.3 151 43.7
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 3.1e-13 79.3 167 42.5
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.0e-13 79.0 147 57.8
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 4.0e-13 79.0 164 51.8
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 9.0e-13 77.8 148 39.2
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 9.0e-13 77.8 163 47.9
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 2.6e-12 76.3 143 52.4
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 2.6e-12 76.3 148 32.4
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 3.4e-12 75.9 152 31.6
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 4.5e-12 75.5 165 39.4
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 5.8e-12 75.1 152 46.7
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 5.8e-12 75.1 140 42.9
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 9.9e-12 74.3 142 50.7
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 9.9e-12 74.3 163 50.9
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 1.3e-11 73.9 171 48.0
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 1.7e-11 73.6 145 57.9
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 1.7e-11 73.6 166 50.6
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 2.2e-11 73.2 163 54.0
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 2.9e-11 72.8 164 43.3
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.9e-11 72.8 50 58.0
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 2.9e-11 72.8 146 56.8
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 3.8e-11 72.4 196 44.4
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 3.8e-11 72.4 169 45.0
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 4.9e-11 72.0 142 46.5
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.9e-11 72.0 50 56.0
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 4.9e-11 72.0 148 44.6
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 6.4e-11 71.6 204 44.6
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 6.4e-11 71.6 62 48.4
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 6.4e-11 71.6 150 43.3
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 8.4e-11 71.2 200 44.5
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 8.4e-11 71.2 75 45.3
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 8.4e-11 71.2 62 51.6
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 8.4e-11 71.2 62 51.6
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 8.4e-11 71.2 146 31.5
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.1e-10 70.9 51 54.9
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 5.4e-10 68.6 167 42.5
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 5.4e-10 68.6 56 46.4
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 5.4e-10 68.6 56 46.4
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 5.4e-10 68.6 62 50.0
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 7.1e-10 68.2 55 52.7
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 7.1e-10 68.2 203 33.0
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 1.2e-09 67.4 54 50.0
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 1.2e-09 67.4 54 50.0
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 1.6e-09 67.0 51 51.0
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 1.6e-09 67.0 51 51.0
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 1.6e-09 67.0 51 51.0
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 1.6e-09 67.0 51 51.0
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 2.1e-09 66.6 54 50.0
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 2.7e-09 66.2 54 48.1
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 2.7e-09 66.2 56 44.6
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 2.7e-09 66.2 148 45.3
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 3.5e-09 65.9 50 52.0
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 3.5e-09 65.9 50 52.0
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 3.5e-09 65.9 51 52.9
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 4.6e-09 65.5 62 45.2
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 4.6e-09 65.5 197 45.2
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 4.6e-09 65.5 51 49.0
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 6.0e-09 65.1 56 42.9
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 1.0e-08 64.3 53 47.2
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 1.0e-08 64.3 53 47.2
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.0e-08 64.3 51 49.0
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 1.0e-08 64.3 51 49.0
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 1.3e-08 63.9 186 47.8
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 1.8e-08 63.5 50 50.0
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.8e-08 63.5 149 43.6
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 2.3e-08 63.2 152 41.4
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.3e-08 63.2 149 43.6
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.3e-08 63.2 149 43.6
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 2.3e-08 63.2 211 37.4
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 2.3e-08 63.2 144 31.2
QL12p022365 Quercus lobata HOM05D005179 ORTHO05D006225 2.3e-08 63.2 40 60.0
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 2.3e-08 63.2 61 42.6
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.0e-08 62.8 147 43.5
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 3.9e-08 62.4 160 33.1
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 5.1e-08 62.0 144 34.7
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 6.7e-08 61.6 161 36.6
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 8.7e-08 61.2 61 42.6
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 8.7e-08 61.2 51 45.1
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.5e-07 60.5 50 46.0
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 1.9e-07 60.1 56 50.0
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 3.3e-07 59.3 162 40.7
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 5.6e-07 58.5 140 42.9
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 2.1e-06 56.6 152 27.6
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 2.8e-06 56.2 139 36.0
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 3.7e-06 55.8 157 51.6
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 3.7e-06 55.8 171 29.8
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.8e-06 55.5 158 37.3


User provided reference genes

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