Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 1.2e-121 439.9 227 100.0
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 5.1e-112 407.9 226 90.7
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 2.5e-111 405.6 227 91.2
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 5.6e-111 404.4 227 89.9
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 9.5e-111 403.7 227 89.9
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 9.5e-111 403.7 227 89.0
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 9.5e-111 403.7 227 88.5
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 2.1e-110 402.5 228 89.5
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 8.1e-110 400.6 227 89.4
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 8.1e-110 400.6 227 88.1
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.8e-109 399.4 227 89.0
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.8e-109 399.4 227 89.4
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 3.1e-109 398.7 227 88.1
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 3.1e-109 398.7 227 87.7
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 5.2e-109 397.9 228 88.6
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 8.9e-109 397.1 227 89.0
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 8.9e-109 397.1 227 88.1
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 5.8e-108 394.4 227 85.5
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 9.9e-108 393.7 227 86.3
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.3e-107 393.3 227 85.5
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 1.3e-107 393.3 227 88.1
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 8.3e-107 390.6 227 86.3
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.4e-106 389.8 226 87.2
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 1.4e-106 389.8 226 87.6
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.4e-106 389.8 227 85.9
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.4e-106 389.8 228 87.3
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 1.9e-106 389.4 227 86.8
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 2.4e-106 389.0 227 85.0
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 2.4e-106 389.0 227 85.9
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 3.2e-106 388.7 226 87.2
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 4.1e-106 388.3 227 83.7
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 7.1e-106 387.5 227 85.9
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 9.2e-106 387.1 226 85.0
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 1.2e-105 386.7 227 85.5
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 1.6e-105 386.3 227 86.8
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.6e-105 386.3 227 86.3
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.7e-105 385.6 226 86.3
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 4.6e-105 384.8 227 84.1
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 4.6e-105 384.8 227 83.3
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 6.0e-105 384.4 228 84.2
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 7.8e-105 384.0 227 85.5
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.0e-104 382.1 227 84.6
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 3.9e-104 381.7 227 83.7
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 3.9e-104 381.7 227 83.7
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 3.9e-104 381.7 226 84.5
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 5.1e-104 381.3 227 85.0
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 6.6e-104 380.9 227 82.4
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 83.7
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 83.3
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 1.5e-103 379.8 219 85.8
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.9e-103 379.4 229 83.8
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 83.3
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 3.3e-103 378.6 228 84.6
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 3.3e-103 378.6 227 85.0
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 4.3e-103 378.3 228 84.6
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 5.6e-103 377.9 227 83.7
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 5.6e-103 377.9 227 81.5
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 5.6e-103 377.9 228 84.6
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 9.6e-103 377.1 227 82.8
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 1.2e-102 376.7 229 83.8
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 1.6e-102 376.3 227 82.8
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 1.6e-102 376.3 227 82.4
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.8e-102 375.6 227 83.3
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 3.6e-102 375.2 227 83.7
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 3.6e-102 375.2 227 83.3
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 3.6e-102 375.2 227 82.4
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 4.7e-102 374.8 227 81.5
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 4.7e-102 374.8 227 83.3
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 4.7e-102 374.8 227 83.7
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 6.2e-102 374.4 227 82.4
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 6.2e-102 374.4 214 86.9
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 8.1e-102 374.0 227 81.9
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 1.4e-101 373.2 227 82.4
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 1.4e-101 373.2 227 81.9
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 2.4e-101 372.5 225 85.8
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 4.0e-101 371.7 229 83.4
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 5.2e-101 371.3 227 81.5
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 5.2e-101 371.3 228 82.0
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 8.9e-101 370.5 215 85.6
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 2.0e-100 369.4 227 80.2
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 3.4e-100 368.6 207 88.9
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 4.4e-100 368.2 227 80.2
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 4.4e-100 368.2 233 80.7
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 7.6e-100 367.5 227 80.2
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 7.6e-100 367.5 225 81.8
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 1.7e-99 366.3 228 79.8
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.2e-99 365.9 218 85.8
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 2.9e-99 365.5 228 80.3
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 4.9e-99 364.8 228 81.1
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 4.9e-99 364.8 227 79.7
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 1.4e-98 363.2 215 83.7
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 2.4e-98 362.5 214 81.8
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 4.2e-98 361.7 217 83.9
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 4.2e-98 361.7 227 80.2
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 5.4e-98 361.3 227 78.9
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 7.1e-98 360.9 227 80.6
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.2e-97 360.1 205 86.3
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.1e-97 359.4 214 83.2
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 2.7e-97 359.0 206 87.4
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 3.5e-97 358.6 214 83.2
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 6.0e-97 357.8 214 83.2
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 6.0e-97 357.8 214 84.6
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 5.1e-96 354.8 206 85.0
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 6.6e-96 354.4 214 82.7
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 2.5e-95 352.4 214 82.7
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 2.5e-95 352.4 265 70.9
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 2.5e-95 352.4 213 82.6
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.3e-94 350.1 214 81.8
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 8.1e-94 347.4 214 78.5
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 2.4e-93 345.9 227 77.1
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 3.1e-93 345.5 237 75.1
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 4.4e-92 341.7 190 88.9
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.7e-91 339.7 210 83.3
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 7.8e-89 330.9 228 74.1
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 1.7e-88 329.7 195 83.6
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.8e-85 319.7 212 75.5
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 1.5e-84 316.6 227 72.7
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 1.7e-83 313.2 191 80.1
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 4.6e-81 305.1 183 87.4
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 6.0e-81 304.7 195 77.9
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 2.4e-77 292.7 227 65.2
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 5.8e-76 288.1 164 89.0
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 1.3e-75 287.0 193 78.8
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 4.2e-74 282.0 224 63.8
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 5.5e-74 281.6 227 68.3
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 4.6e-73 278.5 229 67.7
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 4.6e-73 278.5 216 66.7
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 5.1e-72 275.0 164 81.7
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 2.4e-69 266.2 160 80.6
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 4.1e-69 265.4 209 66.0
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 9.0e-69 264.2 197 72.6
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 2.2e-67 259.6 153 82.4
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 5.0e-67 258.5 150 84.0
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 1.6e-62 243.4 155 79.4
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 2.0e-60 236.5 237 51.5
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 3.3e-55 219.2 215 53.0
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 6.3e-54 214.9 131 78.6
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.2e-52 210.7 201 60.2
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 3.6e-41 172.6 108 80.6
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 1.0e-40 171.0 100 81.0
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 5.2e-40 168.7 115 73.9
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 2.3e-32 143.3 92 75.0
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.3e-30 137.5 109 67.0
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.8e-29 133.7 87 75.9
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 7.7e-28 128.3 135 55.6
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.5e-26 123.2 113 61.9
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 1.7e-19 100.5 63 73.0
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.9e-18 97.1 51 94.1
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 4.0e-16 89.4 97 51.5
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.8e-13 80.5 70 62.9
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 4.1e-13 79.3 68 57.4
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.6e-12 77.4 114 41.2
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 3.9e-11 72.8 208 28.4
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 5.2e-08 62.4 63 57.1


User provided reference genes

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