Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 0.0e+00 1501.9 764 100.0
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 0.0e+00 1209.5 705 82.7
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 0.0e+00 1204.9 705 82.6
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 0.0e+00 1157.5 701 79.3
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.3e-308 1062.8 706 71.1
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 1.3e-308 1062.8 698 73.4
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 4.8e-308 1060.8 702 71.8
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 1.8e-307 1058.9 708 70.8
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 1.2e-306 1056.2 700 71.7
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 1.2e-306 1056.2 699 72.2
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 1.0e-305 1053.1 698 72.3
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 3.8e-305 1051.2 702 71.7
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 2.5e-304 1048.5 702 71.4
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 6.1e-303 1043.9 704 72.0
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 1.5e-301 1039.3 699 71.2
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 2.0e-301 1038.9 708 69.9
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 2.6e-301 1038.5 708 70.5
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 6.3e-300 1033.9 703 69.7
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 2.9e-297 1025.0 663 74.5
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 6.5e-297 1023.8 701 68.9
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 1.1e-296 1023.1 708 69.2
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 2.5e-296 1021.9 704 69.2
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 2.1e-295 1018.8 761 65.7
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 2.6e-293 1011.9 702 69.7
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 4.4e-293 1011.1 705 69.1
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 3.7e-292 1008.1 703 68.6
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 7.8e-290 1000.3 703 68.3
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 1.3e-289 999.6 704 68.2
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 6.6e-289 997.3 704 66.8
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 1.6e-287 992.6 696 68.1
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 8.0e-287 990.3 705 67.0
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 6.8e-286 987.3 703 67.4
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 6.8e-286 987.3 703 70.3
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 2.0e-285 985.7 699 69.2
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 2.9e-284 981.9 705 66.1
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 3.5e-282 974.9 703 68.3
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 3.9e-281 971.5 701 66.6
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 4.3e-280 968.0 709 66.0
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 4.3e-280 968.0 697 66.6
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 1.7e-276 956.1 702 65.8
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 2.0e-274 949.1 703 65.6
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 1.0e-273 946.8 703 65.4
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 2.3e-273 945.7 709 65.9
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 3.3e-272 941.8 725 62.9
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 5.6e-272 941.0 707 64.1
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 3.6e-271 938.3 712 64.0
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 3.6e-271 938.3 712 63.2
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.8e-270 936.0 705 65.7
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 2.3e-270 935.6 711 63.6
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 8.9e-270 933.7 712 63.6
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 1.7e-265 919.5 713 61.6
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 6.6e-265 917.5 696 63.5
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 9.5e-264 913.7 709 64.0
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 8.1e-263 910.6 577 75.0
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 1.4e-262 909.8 710 62.0
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 2.3e-262 909.1 619 71.6
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 5.8e-261 904.4 702 63.7
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 7.6e-261 904.0 698 63.8
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 1.1e-259 900.2 763 60.0
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.4e-259 899.8 699 63.1
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 1.2e-258 896.7 701 63.2
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 6.0e-258 894.4 713 61.3
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.3e-257 893.3 698 63.3
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 3.3e-256 888.6 710 61.0
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 9.6e-256 887.1 711 60.6
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 3.6e-255 885.2 712 60.5
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 4.7e-255 884.8 712 61.9
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 4.7e-255 884.8 713 60.7
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.1e-254 883.6 698 62.3
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 1.8e-254 882.9 712 60.3
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 1.3e-252 876.7 702 60.5
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 1.7e-252 876.3 709 60.8
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 1.4e-251 873.2 710 61.5
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 2.5e-248 862.4 719 59.8
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 4.0e-246 855.1 704 59.9
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 4.5e-245 851.7 698 60.5
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 1.3e-244 850.1 707 59.5
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 1.4e-238 830.1 666 60.7
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 2.1e-234 816.2 678 58.7
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 2.1e-234 816.2 702 58.7
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 1.1e-232 810.4 547 70.9
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 9.6e-232 807.4 707 57.4
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 4.0e-230 802.0 645 62.9
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 3.4e-229 798.9 699 55.8
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.7e-228 796.6 663 59.9
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.9e-227 793.1 709 54.4
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.5e-227 792.7 716 53.9
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 5.5e-227 791.6 716 53.8
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 3.0e-217 759.2 640 58.3
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 3.9e-217 758.8 694 54.6
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 1.3e-215 753.8 687 56.5
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 2.4e-214 749.6 690 55.2
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.8e-201 706.8 712 49.3
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 1.0e-193 681.0 645 56.7
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 1.2e-192 677.6 702 49.1
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.1e-187 661.0 576 57.6
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 4.2e-187 659.1 699 50.6
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.2e-178 630.9 475 63.4
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 3.2e-158 563.1 359 74.4
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 1.5e-152 544.3 431 61.9
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 4.4e-152 542.7 492 55.7
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 3.2e-134 483.4 723 37.9
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 8.1e-130 468.8 676 38.6
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 1.3e-122 444.9 613 40.6
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 4.8e-122 443.0 623 42.4
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.5e-120 438.0 645 39.7
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.5e-120 438.0 700 36.4
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 2.4e-113 414.1 373 55.8
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 3.4e-112 410.2 767 34.3
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.3e-111 408.3 758 34.8
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 2.1e-109 401.0 331 60.1
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 6.1e-101 372.9 334 59.3
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.5e-83 315.1 285 58.2
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 7.0e-73 279.6 558 33.5
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 8.5e-71 272.7 190 65.8
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 1.4e-65 255.4 176 69.9
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 2.3e-60 238.0 138 81.2
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 8.9e-60 236.1 167 62.9
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 5.4e-57 226.9 141 73.8
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.3e-55 222.2 321 38.9
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 9.8e-43 179.5 482 29.7
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 6.4e-34 150.2 123 61.0
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.2e-32 146.0 127 49.6
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 3.2e-25 121.3 103 53.4
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 4.3e-22 110.9 75 64.0
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 7.1e-17 93.6 400 24.5
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 2.5e-14 85.1 80 52.5
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.3e-13 82.8 80 50.0
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 2.1e-13 82.0 76 53.9
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.2e-11 76.3 104 47.1
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 3.9e-07 61.2 131 35.9
Ciclev10023289m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.1e-06 59.7 47 61.7
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 2.5e-06 58.5 60 55.0


User provided reference genes

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