Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G080900 Carya illinoinensis HOM05D007881 ORTHO05D009922 1.7e-31 138.7 69 100.0
QL12p018644 Quercus lobata HOM05D007881 ORTHO05D009922 5.6e-22 107.1 72 76.4
Prupe.6G361800 Prunus persica HOM05D007881 ORTHO05D009922 5.4e-17 90.5 75 61.3
MD04G1245200 Malus domestica HOM05D007881 ORTHO05D009922 7.1e-17 90.1 75 58.7
Manes.12G005400 Manihot esculenta HOM05D007881 ORTHO05D009922 2.1e-16 88.6 71 66.2
GSVIVG01019086001 Vitis vinifera HOM05D007881 ORTHO05D009922 6.0e-16 87.0 68 63.2
PGR119G1449 Punica granatum HOM05D007881 ORTHO05D009922 3.0e-15 84.7 72 56.9
MD12G1086700 Malus domestica HOM05D007881 ORTHO05D009922 1.5e-14 82.4 70 57.1
Nitab4.5_0000083g0100 Nicotiana tabacum HOM05D007881 ORTHO05D009922 1.9e-14 82.0 71 56.3
Thecc.05G194300 Theobroma cacao HOM05D007881 ORTHO05D009922 3.3e-14 81.3 70 65.7
Gohir.A05G392600 Gossypium hirsutum HOM05D007881 ORTHO05D009922 5.6e-14 80.5 70 62.9
Gohir.D04G024500 Gossypium hirsutum HOM05D007881 ORTHO05D009922 5.6e-14 80.5 70 62.9
Gorai.012G027000 Gossypium raimondii HOM05D007881 ORTHO05D009922 5.6e-14 80.5 70 62.9
CAN.G217.11 Capsicum annuum HOM05D007881 ORTHO05D009922 1.6e-13 79.0 72 55.6
Cpa.g.sc9.142 Carica papaya HOM05D007881 ORTHO05D009922 1.6e-13 79.0 70 58.6
Ciclev10033256m.g Citrus clementina HOM05D007881 ORTHO05D009922 1.6e-13 79.0 69 58.0
vmacro10404 Vaccinium macrocarpon HOM05D007881 ORTHO05D009922 2.8e-13 78.2 66 51.5
Sabra15G0148100 Salix brachista HOM05D007881 ORTHO05D009922 3.6e-13 77.8 69 59.4
Solyc04g056425.1 Solanum lycopersicum HOM05D007881 ORTHO05D009922 3.6e-13 77.8 72 55.6
Eucgr.B01417 Eucalyptus grandis HOM05D007881 ORTHO05D009922 8.1e-13 76.6 65 61.5
COL.COLO4_38031 Corchorus olitorius HOM05D007881 ORTHO05D009922 1.1e-12 76.3 71 60.6
Sopen04g025320 Solanum pennellii HOM05D000039 ORTHO05D000366 1.1e-12 76.3 72 54.2
arahy.Tifrunner.gnm1.ann1.FFCC7D Arachis hypogaea HOM05D007881 ORTHO05D009922 1.4e-12 75.9 58 56.9
arahy.Tifrunner.gnm1.ann1.X7CW9T Arachis hypogaea HOM05D007881 ORTHO05D009922 1.4e-12 75.9 58 56.9
AL1G15960 Arabidopsis lyrata HOM05D007881 ORTHO05D009922 2.4e-12 75.1 68 57.4
CSS0004298 Camellia sinensis var. sinensis HOM05D007881 ORTHO05D009922 2.4e-12 75.1 64 53.1
Sp1g04830 Schrenkiella parvula HOM05D007881 ORTHO05D009922 2.4e-12 75.1 43 79.1
Potri.012G134200 Populus trichocarpa HOM05D007881 ORTHO05D009922 3.1e-12 74.7 75 54.7
BolC8t47025H Brassica oleracea HOM05D007881 ORTHO05D009922 5.3e-12 73.9 64 59.4
CARHR005530 Cardamine hirsuta HOM05D007881 ORTHO05D009922 5.3e-12 73.9 45 73.3
BcaC07g36818 Brassica carinata HOM05D007881 ORTHO05D009922 6.9e-12 73.6 43 79.1
A08p36200 Brassica napus HOM05D007881 ORTHO05D009922 6.9e-12 73.6 43 79.1
BraA08t35524Z Brassica rapa HOM05D007881 ORTHO05D009922 6.9e-12 73.6 43 79.1
Potri.015G136500 Populus trichocarpa HOM05D007881 ORTHO05D009922 6.9e-12 73.6 72 54.2
Nitab4.5_0001435g0080 Nicotiana tabacum HOM05D007881 ORTHO05D009922 9.0e-12 73.2 72 52.8
ClCG03G010640 Citrullus lanatus HOM05D007881 ORTHO05D009922 1.2e-11 72.8 59 62.7
Nn7g37671 Nelumbo nucifera HOM05D007881 ORTHO05D009922 1.2e-11 72.8 52 65.4
Atru.chr6.1889 Acer truncatum HOM05D007881 ORTHO05D009922 1.5e-11 72.4 68 54.4
AT1G06010 Arabidopsis thaliana HOM05D007881 ORTHO05D009922 1.5e-11 72.4 45 71.1
Sc16g0010420 Simmondsia chinensis HOM05D003813 ORTHO05D004557 1.5e-11 72.4 67 52.2
Actinidia03288 Actinidia chinensis HOM05D007881 ORTHO05D009922 2.0e-11 72.0 64 56.2
Carub.0001s0535 Capsella rubella HOM05D007881 ORTHO05D009922 2.0e-11 72.0 45 71.1
MELO3C010052.2 Cucumis melo HOM05D007881 ORTHO05D009922 2.0e-11 72.0 61 63.9
Thhalv10009243m.g Eutrema salsugineum HOM05D007881 ORTHO05D009922 2.6e-11 71.6 63 58.7
ATR0215G006 Amborella trichopoda HOM05D007881 ORTHO05D009922 4.5e-11 70.9 61 60.7
THA.LOC109117253 Tarenaya hassleriana HOM05D007881 ORTHO05D009922 4.5e-11 70.9 70 55.7
SalBow1G5699 Salvia bowleyana HOM05D007881 ORTHO05D009922 5.8e-11 70.5 70 52.9
TAR362G1041 Trochodendron aralioides HOM05D007881 ORTHO05D009922 7.6e-11 70.1 53 60.4
CsaV3_1G044490 Cucumis sativus L. HOM05D007881 ORTHO05D009922 9.9e-11 69.7 71 52.1
Oeu034791.1 Olea europaea HOM05D007881 ORTHO05D009922 9.9e-11 69.7 52 61.5
Cc09_g03690 Coffea canephora HOM05D007881 ORTHO05D009922 1.7e-10 68.9 42 69.0
TWI36G1222 Tripterygium wilfordii HOM05D007881 ORTHO05D009922 1.7e-10 68.9 67 53.7
BcaC07g42091 Brassica carinata HOM05D007881 ORTHO05D009922 2.2e-10 68.6 43 69.8
A09p67190 Brassica napus HOM05D007881 ORTHO05D009922 2.2e-10 68.6 43 69.8
C08p51460 Brassica napus HOM05D000559 ORTHO05D009922 2.2e-10 68.6 43 69.8
BolC8t52672H Brassica oleracea HOM05D007881 ORTHO05D009922 2.2e-10 68.6 43 69.8
AUR62000305 Chenopodium quinoa HOM05D007881 ORTHO05D009922 2.2e-10 68.6 73 50.7
RcHm_v2.0_Chr3g0447831 Rosa chinensis HOM05D007881 ORTHO05D009922 2.2e-10 68.6 76 50.0
arahy.Tifrunner.gnm1.ann1.FG2V1D Arachis hypogaea HOM05D007881 ORTHO05D009922 2.9e-10 68.2 45 68.9
Haze_04563 Corylus avellana HOM05D003846 ORTHO05D009922 2.9e-10 68.2 44 75.0
Glyma.11G151200 Glycine max HOM05D007881 ORTHO05D009922 3.8e-10 67.8 44 72.7
Peaxi162Scf00048g00055 Petunia axillaris HOM05D007881 ORTHO05D009922 3.8e-10 67.8 46 65.2
Phvul.005G031800 Phaseolus vulgaris HOM05D007881 ORTHO05D009922 3.8e-10 67.8 60 61.7
Migut.F02122 Erythranthe guttata HOM05D007881 ORTHO05D009922 6.4e-10 67.0 45 64.4
Medtr3g032520 Medicago truncatula HOM05D007881 ORTHO05D009922 1.4e-09 65.9 42 61.9
Aqoxy3G03631 Aquilegia oxysepala HOM05D007881 ORTHO05D009922 1.9e-09 65.5 42 69.0
AUR62006650 Chenopodium quinoa HOM05D007881 ORTHO05D009922 2.4e-09 65.1 73 47.9
Lj3g0003474 Lotus japonicus HOM05D007881 ORTHO05D009922 3.2e-09 64.7 43 62.8
Lsat_1_v5_gn_1_127981 Lactuca sativa HOM05D007881 ORTHO05D009922 4.2e-09 64.3 50 54.0
FAN02G0717 Fragaria x ananassa HOM05D007881 ORTHO05D009922 7.1e-09 63.5 53 58.5
Lalb_Chr25g0282841 Lupinus albus HOM05D007881 ORTHO05D009922 7.1e-09 63.5 68 50.0
DCAR_007684 Daucus carota HOM05D007881 ORTHO05D009922 1.6e-08 62.4 72 47.2
HPP92_003553 Vanilla planifolia HOM05D007881 ORTHO05D009922 1.6e-08 62.4 39 69.2
Sed0019316 Sechium edule HOM05D007881 ORTHO05D009922 2.1e-08 62.0 38 73.7
PGSC0003DMG400007262 Solanum tuberosum HOM05D007881 ORTHO05D009922 2.1e-08 62.0 98 39.8
Psat5g210160 Pisum sativum HOM05D007881 ORTHO05D009922 2.7e-08 61.6 41 63.4
EL10Ac4g09960 Beta vulgaris HOM05D007881 ORTHO05D009922 3.5e-08 61.2 69 47.8
Psat5g211080 Pisum sativum HOM05D007881 ORTHO05D009922 3.5e-08 61.2 41 61.0
CDE02G1687 Ceratophyllum demersum HOM05D007881 ORTHO05D009922 4.6e-08 60.8 67 47.8
FvH4_6g00460 Fragaria vesca HOM05D007881 ORTHO05D009922 4.6e-08 60.8 40 65.0
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 1.0e-07 59.7 45 53.3
FAN09G3126 Fragaria x ananassa HOM05D007881 ORTHO05D009922 2.3e-07 58.5 40 62.5
HanXRQChr16g0510911 Helianthus annuus HOM05D007881 ORTHO05D009922 3.9e-07 57.8 63 41.3
Zm00001eb067480 Zea mays HOM05D007881 ORTHO05D009922 3.9e-07 57.8 64 42.2
arahy.Tifrunner.gnm1.ann1.4W1HTH Arachis hypogaea HOM05D007881 ORTHO05D009922 6.7e-07 57.0 57 49.1
MBI17_g00966_MAGBIO Magnolia biondii HOM05D007881 ORTHO05D009922 6.7e-07 57.0 63 46.0
BraA09t42051Z Brassica rapa HOM05D007881 ORTHO05D009922 4.3e-06 54.3 43 60.5


User provided reference genes

Program Settings