Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 0.0e+00 2595.1 1414 100.0
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 0.0e+00 2357.8 1536 83.0
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 0.0e+00 2343.9 1398 88.1
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 0.0e+00 2297.7 1414 85.4
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 0.0e+00 2280.0 1414 84.6
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 0.0e+00 2271.5 1414 84.7
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 0.0e+00 2270.7 1414 84.5
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 0.0e+00 2263.4 1414 84.2
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 0.0e+00 2257.6 1412 85.3
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 0.0e+00 2256.5 1414 84.1
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 0.0e+00 2254.9 1414 83.8
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 0.0e+00 2252.6 1415 84.0
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 0.0e+00 2252.2 1409 83.7
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 2250.7 1414 83.7
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 2250.3 1414 83.7
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 0.0e+00 2248.0 1414 83.9
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 0.0e+00 2245.3 1414 83.2
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 0.0e+00 2244.5 1414 84.6
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 0.0e+00 2242.6 1414 83.0
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 0.0e+00 2238.4 1414 83.0
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 2237.2 1414 83.2
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 0.0e+00 2234.9 1414 83.9
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 0.0e+00 2233.8 1442 81.8
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 0.0e+00 2227.6 1414 83.1
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 0.0e+00 2226.4 1414 83.2
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 0.0e+00 2215.7 1414 81.6
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 0.0e+00 2209.1 1414 82.3
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 0.0e+00 2208.3 1414 82.0
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 2207.2 1414 82.2
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 0.0e+00 2206.0 1415 83.6
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 0.0e+00 2203.3 1373 84.0
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 0.0e+00 2192.5 1414 81.7
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 0.0e+00 2190.6 1414 82.0
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 0.0e+00 2186.4 1414 82.5
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 0.0e+00 2186.0 1421 81.2
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 0.0e+00 2186.0 1414 82.5
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 0.0e+00 2183.7 1442 80.0
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 0.0e+00 2175.6 1408 81.8
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 0.0e+00 2169.4 1509 78.1
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 0.0e+00 2166.7 1414 81.2
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 0.0e+00 2163.3 1414 81.0
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 0.0e+00 2159.4 1405 81.4
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 0.0e+00 2157.9 1427 79.8
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 0.0e+00 2156.7 1412 81.2
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 0.0e+00 2154.4 1409 80.3
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 0.0e+00 2147.1 1414 80.5
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 0.0e+00 2142.1 1414 80.3
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 0.0e+00 2138.2 1409 80.4
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 2137.5 1414 80.5
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 0.0e+00 2115.1 1417 79.1
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 0.0e+00 2114.0 1409 78.4
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 0.0e+00 2100.9 1414 78.3
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 0.0e+00 2098.9 1451 78.4
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 0.0e+00 2083.9 1409 78.5
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 0.0e+00 2081.6 1441 77.9
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 0.0e+00 2080.4 1414 78.8
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 0.0e+00 2078.1 1409 77.8
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 0.0e+00 2061.2 1415 77.5
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 0.0e+00 2050.0 1443 76.8
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 0.0e+00 2044.2 1414 76.0
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 0.0e+00 2034.6 1409 76.8
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 0.0e+00 2028.8 1409 76.8
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 0.0e+00 2019.2 1400 77.3
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 0.0e+00 2010.0 1414 75.2
Solyc04g050510.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 0.0e+00 2005.3 1306 80.6
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 0.0e+00 1992.2 1414 75.0
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 0.0e+00 1989.2 1417 75.7
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 0.0e+00 1982.6 1414 74.7
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 0.0e+00 1979.5 1414 74.6
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 0.0e+00 1976.8 1172 88.7
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 0.0e+00 1974.1 1415 74.5
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 0.0e+00 1972.6 1417 75.3
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 0.0e+00 1968.7 1420 73.7
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 0.0e+00 1964.5 1414 73.6
Hma1.2p1_0123F.1_g058180 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 0.0e+00 1961.0 1210 85.9
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 0.0e+00 1954.1 1415 73.6
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 0.0e+00 1953.7 1403 74.1
Hma1.2p1_0123F.1_g058190 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 0.0e+00 1951.8 1195 86.2
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 0.0e+00 1950.6 1415 73.6
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 0.0e+00 1947.9 1403 73.9
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 0.0e+00 1947.9 1403 73.9
Peaxi162Scf00071g00269 Petunia axillaris HOM05D003193 ORTHO05D004924 0.0e+00 1943.7 1294 79.5
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 0.0e+00 1923.7 1409 73.7
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 0.0e+00 1920.2 1412 72.9
TAR636G2059 Trochodendron aralioides HOM05D003193 ORTHO05D004924 0.0e+00 1917.1 1241 83.1
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 0.0e+00 1911.0 1415 72.4
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 0.0e+00 1910.2 1225 83.6
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 0.0e+00 1906.3 1402 73.7
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 0.0e+00 1902.1 1204 83.2
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 0.0e+00 1885.5 1413 72.1
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 0.0e+00 1883.2 1414 69.5
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 0.0e+00 1768.8 1411 68.7
Hund07170 Selenicereus undatus HOM05D003193 ORTHO05D004924 0.0e+00 1763.4 1243 74.9
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 0.0e+00 1747.3 1413 65.4
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 0.0e+00 1700.6 1408 63.4
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 0.0e+00 1700.3 1380 67.0
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 0.0e+00 1622.4 1410 61.4
Os03g0721200 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 0.0e+00 1576.2 1262 67.8
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 0.0e+00 1492.6 910 85.6
MD04G1233800 Malus domestica HOM05D003193 ORTHO05D004924 0.0e+00 1434.9 1401 60.1
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 0.0e+00 1418.7 1414 56.5
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 0.0e+00 1342.0 778 88.6
Oeu055042.1 Olea europaea HOM05D003193 ORTHO05D004924 0.0e+00 1281.2 778 85.3
SalBow1G0653 Salvia bowleyana HOM05D003193 ORTHO05D004924 0.0e+00 1270.0 1141 63.7
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 0.0e+00 1137.1 1457 45.4
CARHR056140 Cardamine hirsuta HOM05D003193 ORTHO05D004924 0.0e+00 1112.4 925 66.2
MCO11G232 Micromonas commoda HOM05D003193 ORTHO05D004924 0.0e+00 1096.3 1161 52.0
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 1.9e-302 1043.1 813 69.1
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 5.1e-295 1018.5 810 70.1
PRCOL_00002743 Prasinoderma coloniale HOM05D003193 ORTHO05D004924 1.4e-292 1010.4 1461 41.9
Actinidia03821 Actinidia chinensis HOM05D003193 ORTHO05D004924 3.7e-285 985.7 928 62.3
Actinidia06816 Actinidia chinensis HOM05D003193 ORTHO05D004924 6.9e-276 954.9 882 64.2
Nitab4.5_0000841g0120 Nicotiana tabacum HOM05D003193 ORTHO05D004924 6.3e-269 931.8 684 73.4
CDE09G0101 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 8.3e-237 825.1 1007 49.5
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.4e-231 807.7 453 91.2
CAN.G131.16 Capsicum annuum HOM05D003193 ORTHO05D004924 4.0e-231 806.2 732 62.0
Zm00001eb208190 Zea mays HOM05D003193 ORTHO05D004924 5.7e-230 802.4 777 57.3
SEGI_35396 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.0e-218 765.0 456 84.0
MELO3C008660.2 Cucumis melo HOM05D003193 ORTHO05D004924 2.6e-190 670.6 382 89.0
SalBow1G3637 Salvia bowleyana HOM05D003193 ORTHO05D004924 6.4e-189 666.0 501 70.3
Zm00001eb208180 Zea mays HOM05D003193 ORTHO05D004924 5.1e-162 576.6 345 85.2
Nitab4.5_0018351g0010 Nicotiana tabacum HOM05D003193 ORTHO05D023334 5.3e-135 486.9 434 62.4
Psat2g117360 Pisum sativum HOM05D003193 ORTHO05D004924 7.2e-124 449.9 348 69.8
SEGI_04281 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.3e-120 439.1 388 62.4
SEGI_23671 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 3.6e-115 421.0 286 74.5
Lsat_1_v5_gn_7_43461 Lactuca sativa HOM05D003193 ORTHO05D004924 1.7e-104 385.6 253 79.4
Lsat_1_v5_gn_8_84401 Lactuca sativa HOM05D003193 ORTHO05D004924 3.4e-81 308.1 197 76.6
FAN09G1546 Fragaria x ananassa HOM05D003193 ORTHO05D004924 4.4e-81 307.8 174 88.5
Lsat_1_v5_gn_2_9720 Lactuca sativa HOM05D003193 ORTHO05D004924 8.4e-80 303.5 199 78.9
Lsat_1_v5_gn_3_136501 Lactuca sativa HOM05D003193 ORTHO05D004924 9.3e-71 273.5 200 69.5
Nitab4.5_0019712g0010 Nicotiana tabacum HOM05D003193 ORTHO05D004924 5.6e-68 264.2 141 92.9
Actinidia26097 Actinidia chinensis HOM05D003193 ORTHO05D004924 4.0e-66 258.1 155 85.2
Actinidia26096 Actinidia chinensis HOM05D003193 ORTHO05D023334 1.2e-57 229.9 188 59.6
Psat2g117480 Pisum sativum HOM05D003193 ORTHO05D029199 2.0e-57 229.2 144 86.8
MCO13G622 Micromonas commoda HOM05D000681 ORTHO05D025872 1.0e-53 216.9 387 32.6
Solyc04g050520.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 2.5e-52 212.2 115 92.2
Peaxi162Scf00071g02610 Petunia axillaris HOM05D003193 ORTHO05D004924 1.3e-51 209.9 115 91.3
Lsat_1_v5_gn_8_52980 Lactuca sativa HOM05D003193 ORTHO05D004924 2.8e-51 208.8 195 60.5
Hund28419 Selenicereus undatus HOM05D003193 ORTHO05D004924 2.8e-51 208.8 115 91.3
Hund28421 Selenicereus undatus HOM05D003193 ORTHO05D004924 2.8e-51 208.8 115 91.3
Lsat_1_v5_gn_5_100381 Lactuca sativa HOM05D003193 ORTHO05D036451 3.2e-47 195.3 141 75.9
Lsat_1_v5_gn_1_12580 Lactuca sativa HOM05D003193 ORTHO05D036451 2.9e-40 172.2 232 46.6
Lsat_1_v5_gn_2_111060 Lactuca sativa HOM05D003193 ORTHO05D000541 8.5e-40 170.6 114 80.7
Actinidia06817 Actinidia chinensis HOM05D003193 ORTHO05D004924 4.2e-39 168.3 120 77.5
Cre14.g615950 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D028791 6.3e-35 154.5 296 33.8
Cre04.g222700 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D028791 1.8e-34 152.9 291 30.2
PRCOL_00000464 Prasinoderma coloniale HOM05D000681 ORTHO05D025872 6.9e-34 151.0 335 30.7
Nitab4.5_0019712g0020 Nicotiana tabacum HOM05D003193 ORTHO05D004924 9.4e-31 140.6 79 89.9
AL2G19220 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 5.9e-25 121.3 111 61.3
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 1.1e-23 117.1 87 75.9
Ah.02g118650 Amaranthus hybridus HOM05D003193 ORTHO05D004924 4.2e-23 115.2 72 80.6
DCAR_029995 Daucus carota HOM05D003193 ORTHO05D023334 9.4e-23 114.0 72 70.8
DCAR_032356 Daucus carota HOM05D003193 ORTHO05D023334 9.4e-23 114.0 72 70.8
SEGI_09842 Sequoiadendron giganteum HOM05D003193 ORTHO05D036451 2.3e-21 109.4 83 68.7
DCAR_025592 Daucus carota HOM05D003193 ORTHO05D029199 3.0e-21 109.0 54 96.3
PRCOL_00007280 Prasinoderma coloniale HOM05D000681 ORTHO05D028791 1.5e-20 106.7 269 26.4
Lsat_1_v5_gn_5_158860 Lactuca sativa HOM05D003193 ORTHO05D231496 2.2e-19 102.8 65 78.5
Actinidia06820 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.0e-16 94.0 55 80.0
Manes.08G142350 Manihot esculenta HOM05D003193 ORTHO05D023334 1.0e-16 94.0 99 51.5
Lsat_1_v5_gn_8_87461 Lactuca sativa HOM05D003193 ORTHO05D000541 1.1e-15 90.5 55 83.6
TWI60G1601 Tripterygium wilfordii HOM05D003193 ORTHO05D029199 8.0e-14 84.3 81 60.5
DCAR_015795 Daucus carota HOM05D003193 ORTHO05D029199 1.0e-13 84.0 43 93.0
arahy.Tifrunner.gnm1.ann1.V6B23X Arachis hypogaea HOM05D003193 ORTHO05D084303 1.5e-12 80.1 123 43.1
Actinidia23236 Actinidia chinensis HOM05D003193 ORTHO05D055714 2.2e-11 76.3 122 47.5
Lsat_1_v5_gn_8_118300 Lactuca sativa HOM05D003193 ORTHO05D002149 6.3e-11 74.7 40 85.0
PSO104G0170 Papaver somniferum HOM05D003193 ORTHO05D000001 5.0e-08 65.1 37 81.1
QL03p032673 Quercus lobata HOM05D003193 ORTHO05D337941 7.2e-07 61.2 47 63.8


User provided reference genes

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