Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 1.2e-259 899.4 483 100.0
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 9.5e-76 288.5 518 45.6
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 2.9e-64 250.4 575 40.0
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 1.1e-63 248.4 621 37.8
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 6.6e-61 239.2 613 37.0
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 5.8e-57 226.1 496 40.3
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 1.1e-55 221.9 505 40.6
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 1.5e-52 211.5 605 35.2
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 3.5e-46 190.3 504 37.5
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 2.5e-44 184.1 526 35.6
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 6.2e-43 179.5 483 35.2
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 1.1e-42 178.7 514 34.2
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 3.1e-42 177.2 531 36.2
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 5.3e-42 176.4 616 32.1
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 2.6e-41 174.1 566 32.3
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 3.4e-41 173.7 526 32.1
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 8.4e-40 169.1 498 35.5
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 1.4e-39 168.3 561 31.7
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 5.4e-39 166.4 612 31.7
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 2.1e-38 164.5 538 32.3
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 3.9e-37 160.2 589 32.3
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 1.3e-35 155.2 627 30.9
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 6.2e-35 152.9 591 31.0
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 1.1e-34 152.1 622 30.9
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 1.1e-34 152.1 599 29.9
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 1.5e-33 148.3 593 31.4
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 3.4e-33 147.1 497 31.2
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 4.5e-33 146.7 642 28.8
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 4.5e-33 146.7 474 33.3
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 5.8e-33 146.4 599 31.2
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 1.3e-32 145.2 415 35.9
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 3.8e-32 143.7 595 29.6
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 6.5e-32 142.9 665 27.7
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 1.9e-31 141.4 606 30.0
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 2.7e-30 137.5 618 28.8
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 3.0e-29 134.0 619 28.9
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 6.7e-29 132.9 527 30.6
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.1e-28 132.1 668 26.5
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 1.9e-28 131.3 504 32.3
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 7.4e-28 129.4 148 56.1
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 9.6e-28 129.0 316 36.4
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 4.8e-27 126.7 666 26.7
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.4e-26 125.2 571 28.7
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 2.4e-26 124.4 427 35.4
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 3.1e-26 124.0 577 29.5
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 9.0e-26 122.5 396 32.1
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 4.2e-23 113.6 269 36.8
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 7.9e-22 109.4 486 28.6
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 1.0e-21 109.0 502 27.7
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.8e-21 108.2 585 28.2
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 3.9e-21 107.1 490 28.4
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 8.7e-21 105.9 73 75.3
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 1.1e-20 105.5 327 33.6
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 1.9e-20 104.8 498 28.9
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 1.9e-20 104.8 578 28.5
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 9.7e-20 102.4 610 27.9
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 1.3e-19 102.1 490 26.7
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 2.8e-19 100.9 580 28.3
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 4.8e-19 100.1 639 24.6
Haze_03334 Corylus avellana HOM05D007504 ORTHO05D007629 6.3e-19 99.8 90 67.8
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 6.3e-19 99.8 327 33.9
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 1.1e-18 99.0 156 42.3
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 2.4e-18 97.8 644 25.8
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.2e-17 95.5 77 64.9
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 2.6e-17 94.4 71 67.6
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 2.6e-17 94.4 343 32.4
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 5.9e-17 93.2 146 39.0
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 2.9e-16 90.9 163 42.9
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 2.9e-16 90.9 103 52.4
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 6.5e-16 89.7 634 26.7
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 2.5e-15 87.8 448 29.9
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 4.2e-15 87.0 451 29.3
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 5.5e-15 86.7 144 38.2
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 9.4e-15 85.9 170 36.5
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 9.4e-15 85.9 675 25.6
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 1.6e-14 85.1 425 28.9
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 2.1e-14 84.7 73 60.3
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 2.7e-14 84.3 599 27.0
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 3.6e-14 84.0 164 37.2
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 3.0e-13 80.9 477 25.8
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 8.8e-13 79.3 472 25.4
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 3.3e-12 77.4 88 47.7
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 4.3e-12 77.0 456 27.0
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 7.4e-12 76.3 182 34.6
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 1.3e-11 75.5 457 25.2
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 1.3e-11 75.5 473 25.8
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 1.7e-11 75.1 457 25.2
Phvul.010G077868 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 2.2e-11 74.7 454 27.3
Glyma.10G170100 Glycine max HOM05D007504 ORTHO05D007629 2.8e-11 74.3 125 38.4
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 4.8e-11 73.6 213 29.6
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 4.8e-11 73.6 466 25.5
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 6.3e-11 73.2 621 24.6
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 1.1e-10 72.4 475 24.8
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 1.1e-10 72.4 445 25.8
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 4.1e-10 70.5 93 40.9
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 6.9e-10 69.7 372 31.2
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 6.9e-10 69.7 197 31.5
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 9.1e-10 69.3 68 54.4
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 1.2e-09 68.9 458 25.1
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 1.2e-09 68.9 349 27.2
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 2.0e-09 68.2 240 34.6
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 2.6e-09 67.8 460 24.8
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 2.6e-09 67.8 168 38.1
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 5.9e-09 66.6 203 30.0
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 5.9e-09 66.6 221 29.9
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 5.9e-09 66.6 399 27.6
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 5.0e-08 63.5 460 24.6
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 6.5e-08 63.2 221 29.9
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 8.5e-08 62.8 458 25.1
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 8.5e-08 62.8 458 25.3
Nn1g08319 Nelumbo nucifera HOM05D007504 ORTHO05D007629 1.1e-07 62.4 52 61.5
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 5.5e-07 60.1 72 47.2
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 9.4e-07 59.3 229 30.6
Cpa.g.sc123.15 Carica papaya HOM05D007504 ORTHO05D007629 7.9e-06 56.2 236 31.8


User provided reference genes

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