Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G074400 Carya illinoinensis HOM05D000780 ORTHO05D009033 1.7e-129 466.1 240 100.0
QL01p042200 Quercus lobata HOM05D000780 ORTHO05D009033 1.6e-87 326.6 250 74.4
MD12G1251900 Malus domestica HOM05D000780 ORTHO05D009033 3.6e-76 288.9 243 66.3
Potri.019G023700 Populus trichocarpa HOM05D000780 ORTHO05D009033 3.6e-76 288.9 238 69.3
TWI34G1716 Tripterygium wilfordii HOM05D000780 ORTHO05D009033 1.8e-75 286.6 233 67.4
RcHm_v2.0_Chr3g0449091 Rosa chinensis HOM05D000780 ORTHO05D009033 2.3e-75 286.2 241 65.6
CsaV3_1G045040 Cucumis sativus L. HOM05D000780 ORTHO05D009033 5.2e-75 285.0 241 68.0
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 8.9e-75 284.3 245 66.9
Potri.013G050300 Populus trichocarpa HOM05D000780 ORTHO05D009033 8.9e-75 284.3 243 66.7
GSVIVG01026324001 Vitis vinifera HOM05D000780 ORTHO05D009033 5.8e-74 281.6 246 66.3
Thecc.05G266300 Theobroma cacao HOM05D000780 ORTHO05D009033 1.3e-73 280.4 237 68.8
MELO3C010086.2 Cucumis melo HOM05D000780 ORTHO05D009033 1.7e-73 280.0 241 67.2
Ciclev10021307m.g Citrus clementina HOM05D000780 ORTHO05D009033 8.3e-73 277.7 242 66.1
FvH4_6g01461 Fragaria vesca HOM05D000780 ORTHO05D009033 1.9e-72 276.6 242 64.9
Glyma.20G221500 Glycine max HOM05D000780 ORTHO05D009033 3.2e-72 275.8 227 67.4
Atru.chr2.1117 Acer truncatum HOM05D000780 ORTHO05D009033 4.1e-72 275.4 242 64.9
TAR633G0111 Trochodendron aralioides HOM05D000780 ORTHO05D009033 4.6e-71 271.9 233 66.1
Gohir.A13G161800 Gossypium hirsutum HOM05D000780 ORTHO05D009033 5.1e-70 268.5 238 65.1
Phvul.L002032 Phaseolus vulgaris HOM05D000780 ORTHO05D009033 6.6e-70 268.1 228 64.5
Haze_04472 Corylus avellana HOM05D000780 ORTHO05D009033 1.1e-69 267.3 245 67.8
Hma1.2p1_0130F.1_g060510 Hydrangea macrophylla HOM05D000780 ORTHO05D009033 1.9e-69 266.5 249 63.9
Gohir.D13G172200 Gossypium hirsutum HOM05D000780 ORTHO05D009033 2.5e-69 266.2 239 66.1
Manes.09G146600 Manihot esculenta HOM05D000780 ORTHO05D009033 2.5e-69 266.2 238 63.4
VMungo0720G1285 Vigna mungo HOM05D000780 ORTHO05D009033 2.5e-69 266.2 230 64.3
Gorai.013G188500 Gossypium raimondii HOM05D000780 ORTHO05D009033 4.3e-69 265.4 239 66.1
CSS0005756 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 5.6e-69 265.0 244 63.1
arahy.Tifrunner.gnm1.ann1.09X96J Arachis hypogaea HOM05D000780 ORTHO05D009033 7.3e-69 264.6 215 67.4
CSS0024577 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 7.3e-69 264.6 250 64.4
arahy.Tifrunner.gnm1.ann1.ZAXM00 Arachis hypogaea HOM05D000780 ORTHO05D009033 2.1e-68 263.1 215 67.0
THA.LOC104821566 Tarenaya hassleriana HOM05D000780 ORTHO05D009033 2.8e-68 262.7 258 60.5
Carub.0007s3248 Capsella rubella HOM05D000780 ORTHO05D009033 3.6e-68 262.3 242 63.6
Lj5g0019051 Lotus japonicus HOM05D000780 ORTHO05D009033 8.1e-68 261.2 246 63.0
CARHR215730 Cardamine hirsuta HOM05D000780 ORTHO05D009033 1.4e-67 260.4 242 62.0
Ca_09986_v3 Cicer arietinum L. HOM05D000780 ORTHO05D009033 1.8e-67 260.0 232 62.5
Nn1g03021 Nelumbo nucifera HOM05D000780 ORTHO05D009033 2.3e-67 259.6 246 64.2
Lalb_Chr21g0311301 Lupinus albus HOM05D000780 ORTHO05D009033 4.0e-67 258.8 226 63.3
ClCG03G011490 Citrullus lanatus HOM05D000780 ORTHO05D009033 3.4e-66 255.8 240 62.9
MSTRG.27431 Avicennia marina HOM05D000780 ORTHO05D009033 5.8e-66 255.0 233 63.1
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 5.8e-66 255.0 183 72.1
Migut.F02052 Erythranthe guttata HOM05D000780 ORTHO05D009033 4.9e-65 251.9 244 62.3
PGR004G1412 Punica granatum HOM05D000780 ORTHO05D009033 6.4e-65 251.5 242 61.2
Aa31LG9G18020 Aethionema arabicum HOM05D000780 ORTHO05D009033 8.4e-65 251.1 248 60.9
AT5G37360 Arabidopsis thaliana HOM05D000780 ORTHO05D009033 1.1e-64 250.8 237 62.4
Sp7g05110 Schrenkiella parvula HOM05D000780 ORTHO05D009033 1.4e-64 250.4 243 61.7
Actinidia06831 Actinidia chinensis HOM05D000780 ORTHO05D009033 2.4e-64 249.6 249 60.2
AL7G45990 Arabidopsis lyrata HOM05D000780 ORTHO05D009033 2.4e-64 249.6 241 62.7
Medtr1g079763 Medicago truncatula HOM05D000780 ORTHO05D009033 1.2e-63 247.3 238 59.7
Sc24g0002520 Simmondsia chinensis HOM05D000780 ORTHO05D009033 1.2e-63 247.3 239 61.9
EL10Ac4g09771 Beta vulgaris HOM05D000780 ORTHO05D009033 2.1e-63 246.5 235 61.3
BcaC02g09559 Brassica carinata HOM05D000780 ORTHO05D009033 2.1e-63 246.5 216 63.0
BolC4t25992H Brassica oleracea HOM05D000780 ORTHO05D009033 2.1e-63 246.5 216 63.0
Ah.06g187930 Amaranthus hybridus HOM05D000780 ORTHO05D009033 2.7e-63 246.1 216 63.9
C04p44170 Brassica napus HOM05D000780 ORTHO05D009033 2.7e-63 246.1 216 63.0
AUR62006989 Chenopodium quinoa HOM05D000780 ORTHO05D009033 2.7e-63 246.1 216 63.0
Eucgr.H04210 Eucalyptus grandis HOM05D000780 ORTHO05D009033 2.7e-63 246.1 243 58.8
Aqoxy5G00106 Aquilegia oxysepala HOM05D000780 ORTHO05D009033 3.5e-63 245.7 236 61.4
Lsat_1_v5_gn_9_46781 Lactuca sativa HOM05D000780 ORTHO05D009033 6.0e-63 245.0 242 59.1
Glyma.10G167600 Glycine max HOM05D000780 ORTHO05D009033 1.0e-62 244.2 239 60.7
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 1.0e-62 244.2 236 58.1
BraA04t16719Z Brassica rapa HOM05D000780 ORTHO05D009033 8.6e-62 241.1 214 62.6
Thhalv10027857m.g Eutrema salsugineum HOM05D000780 ORTHO05D009033 7.3e-61 238.0 240 58.3
A04p10530 Brassica napus HOM05D000780 ORTHO05D009033 1.6e-60 236.9 218 61.9
MBI10_g26046_MAGBIO Magnolia biondii HOM05D000780 ORTHO05D009033 2.1e-60 236.5 226 59.7
Solyc04g050470.4 Solanum lycopersicum HOM05D000780 ORTHO05D009033 4.7e-60 235.3 243 60.1
Rhsim05G0170400 Rhododendron simsii HOM05D000780 ORTHO05D009033 1.4e-59 233.8 257 58.8
Hund07171 Selenicereus undatus HOM05D000780 ORTHO05D009033 5.2e-59 231.9 201 64.7
Nitab4.5_0003148g0030 Nicotiana tabacum HOM05D000780 ORTHO05D009033 6.9e-59 231.5 229 59.4
Prupe.6G353000 Prunus persica HOM05D000780 ORTHO05D009033 3.4e-58 229.2 239 59.0
FAN02G1432 Fragaria x ananassa HOM05D000780 ORTHO05D009033 5.8e-58 228.4 243 55.6
SalBow1G5981 Salvia bowleyana HOM05D000780 ORTHO05D009033 9.9e-58 227.6 244 55.3
unitig_37.g12284 Utricularia gibba HOM05D000780 ORTHO05D009033 1.3e-57 227.3 192 63.0
FAN14G3828 Fragaria x ananassa HOM05D000780 ORTHO05D001132 1.7e-57 226.9 254 54.7
SalBow1G6873 Salvia bowleyana HOM05D000780 ORTHO05D009033 1.7e-57 226.9 244 54.9
FAN05G0905 Fragaria x ananassa HOM05D000780 ORTHO05D001132 2.2e-57 226.5 254 53.5
ATR0088G058 Amborella trichopoda HOM05D000780 ORTHO05D009033 2.9e-57 226.1 238 56.3
vmacro19978 Vaccinium macrocarpon HOM05D000780 ORTHO05D009033 1.9e-56 223.4 299 51.2
FAN14G4937 Fragaria x ananassa HOM05D000780 ORTHO05D001132 4.2e-56 222.2 255 53.3
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.6e-55 220.3 161 68.9
Sabra19G0033700 Salix brachista HOM05D000780 ORTHO05D009033 2.1e-55 219.9 239 57.3
CANSAT54G0520 Cannabis sativa HOM05D000780 ORTHO05D009033 4.6e-55 218.8 192 65.6
PSO210G3904 Papaver somniferum HOM05D000780 ORTHO05D009033 7.8e-55 218.0 253 54.5
DCAR_030971 Daucus carota HOM05D000780 ORTHO05D009033 3.9e-54 215.7 224 56.2
ECA232G3479 Erigeron canadensis HOM05D000780 ORTHO05D009033 2.5e-53 213.0 200 60.5
Nitab4.5_0000841g0080 Nicotiana tabacum HOM05D000780 ORTHO05D009033 1.3e-52 210.7 229 57.2
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 1.3e-49 200.7 232 52.6
HanXRQChr05g0145151 Helianthus annuus HOM05D000780 ORTHO05D009033 3.8e-49 199.1 205 55.1
Os02g0815400 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D009033 3.8e-49 199.1 199 55.3
MD12G1251000 Malus domestica HOM05D000072 ORTHO05D009033 8.4e-49 198.0 192 62.0
Zm00001eb258750 Zea mays HOM05D000780 ORTHO05D009033 1.9e-48 196.8 192 56.8
Dinv01155 Davidia involucrata HOM05D000780 ORTHO05D009033 3.5e-47 192.6 145 69.7
TPR.G10273 Trifolium pratense HOM05D000780 ORTHO05D009033 3.0e-46 189.5 255 49.8
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 2.5e-45 186.4 167 59.3
MD12G1250900 Malus domestica HOM05D000780 ORTHO05D009033 4.0e-43 179.1 161 65.2
Cpa.g.c33516 Carica papaya HOM05D000780 ORTHO05D009033 2.0e-42 176.8 131 70.2
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 1.2e-39 167.5 210 48.6
Peaxi162Scf00077g00138 Petunia axillaris HOM05D000780 ORTHO05D009033 1.0e-38 164.5 157 59.2
SMO172G0144 Selaginella moellendorffii HOM05D000780 ORTHO05D009033 2.2e-33 146.7 167 47.3
Sed0013634 Sechium edule HOM05D000780 ORTHO05D009033 8.4e-33 144.8 260 43.5
Eucgr.H04100 Eucalyptus grandis HOM05D000780 ORTHO05D009033 5.5e-32 142.1 153 55.6
AagrBONN_evm.TU.Sc2ySwM_228.3981 Anthoceros agrestis HOM05D000780 ORTHO05D009033 9.3e-32 141.4 235 37.0
HPP92_009056 Vanilla planifolia HOM05D001254 ORTHO05D001386 1.6e-31 140.6 175 46.9
SEGI_21696 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 2.7e-31 139.8 180 46.7
Cc09_g03040 Coffea canephora HOM05D000780 ORTHO05D009033 6.0e-31 138.7 159 53.5
Eucgr.H04102 Eucalyptus grandis HOM05D000780 ORTHO05D009033 7.2e-24 115.2 121 55.4
Lj2A46G68 Lonicera japonica HOM05D000780 ORTHO05D009033 1.6e-23 114.0 83 71.1
Pp3c18_1300 Physcomitrium patens HOM05D000780 ORTHO05D009033 6.1e-23 112.1 198 34.8
CBR_g11120 Chara braunii HOM05D000780 ORTHO05D009033 6.7e-22 108.6 218 34.9
FAN05G5022 Fragaria x ananassa HOM05D000780 ORTHO05D009033 5.7e-21 105.5 114 56.1
PGSC0003DMG401028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 6.9e-19 98.6 94 63.8
CAN.G4.37 Capsicum annuum HOM05D000780 ORTHO05D009033 9.1e-19 98.2 98 60.2
FAN11G0130 Fragaria x ananassa HOM05D000780 ORTHO05D009033 2.6e-13 80.1 213 35.7
Sopen04g021250 Solanum pennellii HOM05D000780 ORTHO05D009033 9.7e-13 78.2 67 64.2
Cc09_g03030 Coffea canephora HOM05D000780 ORTHO05D009033 2.9e-09 66.6 53 64.2
FAN09G0636 Fragaria x ananassa HOM05D000780 ORTHO05D001132 6.5e-09 65.5 53 60.4
FAN18G1636 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.2e-07 61.2 73 47.9
FAN21G2408 Fragaria x ananassa HOM05D000780 ORTHO05D009033 6.1e-07 58.9 59 57.6
HPP92_009057 Vanilla planifolia HOM05D000780 ORTHO05D009033 2.3e-06 57.0 56 53.6


User provided reference genes

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