Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G067000 Carya illinoinensis HOM05D006821 ORTHO05D008740 2.2e-177 625.5 328 100.0
Haze_04355 Corylus avellana HOM05D006821 ORTHO05D008740 2.8e-127 459.1 329 73.3
Cfa006429 Carpinus fangiana HOM05D006821 ORTHO05D008740 7.0e-123 444.5 329 72.0
QL03p025768 Quercus lobata HOM05D006821 ORTHO05D008740 8.6e-121 437.6 381 64.8
TAR633G1083 Trochodendron aralioides HOM05D006821 ORTHO05D008740 1.1e-120 437.2 326 67.8
TAR362G0286 Trochodendron aralioides HOM05D006821 ORTHO05D008740 1.9e-115 419.9 326 66.6
Manes.09G153500 Manihot esculenta HOM05D006821 ORTHO05D008740 3.1e-110 402.5 328 63.4
RcHm_v2.0_Chr3g0451171 Rosa chinensis HOM05D006821 ORTHO05D008740 5.2e-110 401.7 323 65.0
Duzib177G0830 Durio zibethinus HOM05D006821 ORTHO05D008740 7.6e-109 397.9 329 60.2
Thecc.05G283900 Theobroma cacao HOM05D006821 ORTHO05D008740 1.3e-108 397.1 331 59.5
MD04G1224000 Malus domestica HOM05D006821 ORTHO05D008740 1.7e-108 396.7 322 64.0
MD12G1240800 Malus domestica HOM05D006821 ORTHO05D008740 3.7e-108 395.6 323 64.4
Actinidia18357 Actinidia chinensis HOM05D006821 ORTHO05D008740 4.9e-108 395.2 327 62.4
Glyma.03G246900 Glycine max HOM05D006821 ORTHO05D008740 4.9e-108 395.2 325 62.5
CSS0006427 Camellia sinensis var. sinensis HOM05D006821 ORTHO05D008740 1.4e-107 393.7 329 62.6
COL.COLO4_15343 Corchorus olitorius HOM05D006821 ORTHO05D008740 1.4e-107 393.7 331 59.8
Prupe.6G342700 Prunus persica HOM05D006821 ORTHO05D008740 4.1e-107 392.1 323 63.5
Manes.08G134300 Manihot esculenta HOM05D006821 ORTHO05D008740 1.6e-106 390.2 328 61.9
Dinv10030 Davidia involucrata HOM05D006821 ORTHO05D008740 2.7e-106 389.4 314 65.3
Duzib128G0425 Durio zibethinus HOM05D006821 ORTHO05D008740 2.7e-106 389.4 331 58.0
Hma1.2p1_0195F.1_g084560 Hydrangea macrophylla HOM05D006821 ORTHO05D008740 2.7e-106 389.4 327 63.0
Potri.005G052900 Populus trichocarpa HOM05D006821 ORTHO05D008740 2.7e-106 389.4 329 61.7
CANSAT54G2350 Cannabis sativa HOM05D006821 ORTHO05D008740 7.8e-106 387.9 329 61.7
Glyma.19G244500 Glycine max HOM05D006821 ORTHO05D008740 3.0e-105 386.0 326 61.0
GSVIVG01021794001 Vitis vinifera HOM05D006821 ORTHO05D008740 3.3e-104 382.5 322 60.9
FAN09G4578 Fragaria x ananassa HOM05D006821 ORTHO05D008740 9.6e-104 380.9 323 60.7
Gohir.D13G107900 Gossypium hirsutum HOM05D006821 ORTHO05D008740 1.6e-103 380.2 333 56.8
Gohir.A13G104500 Gossypium hirsutum HOM05D006821 ORTHO05D008740 2.1e-103 379.8 333 56.8
FAN02G2705 Fragaria x ananassa HOM05D006821 ORTHO05D008740 2.8e-103 379.4 323 60.4
Gorai.013G120900 Gossypium raimondii HOM05D006821 ORTHO05D008740 2.8e-103 379.4 333 56.5
TWI56G0757 Tripterygium wilfordii HOM05D006821 ORTHO05D008740 2.8e-103 379.4 328 60.1
Atru.chr2.810 Acer truncatum HOM05D006821 ORTHO05D008740 8.1e-103 377.9 328 59.8
FvH4_6g02990 Fragaria vesca HOM05D006821 ORTHO05D008740 8.1e-103 377.9 323 60.1
FAN14G2672 Fragaria x ananassa HOM05D006821 ORTHO05D008740 8.1e-103 377.9 323 60.4
FAN05G1836 Fragaria x ananassa HOM05D006821 ORTHO05D008740 2.4e-102 376.3 323 60.1
Nitab4.5_0012228g0010 Nicotiana tabacum HOM05D006821 ORTHO05D008740 2.4e-102 376.3 329 57.4
Potri.013G040500 Populus trichocarpa HOM05D006821 ORTHO05D008740 2.4e-102 376.3 334 59.6
FAN05G4221 Fragaria x ananassa HOM05D006821 ORTHO05D008740 6.8e-102 374.8 323 59.8
Sc20g0000300 Simmondsia chinensis HOM05D006821 ORTHO05D008740 8.9e-102 374.4 331 59.2
Ciclev10001807m.g Citrus clementina HOM05D006821 ORTHO05D008740 1.5e-101 373.6 332 59.0
Cc02_g30600 Coffea canephora HOM05D006821 ORTHO05D008740 3.4e-101 372.5 326 59.5
Lj1g0025723 Lotus japonicus HOM05D006821 ORTHO05D008740 3.4e-101 372.5 323 60.7
arahy.Tifrunner.gnm1.ann1.7SV4PL Arachis hypogaea HOM05D006821 ORTHO05D008740 9.9e-101 370.9 326 58.9
Aqoxy2G03492 Aquilegia oxysepala HOM05D006821 ORTHO05D008740 1.6e-98 363.6 325 59.4
Peaxi162Scf00282g00328 Petunia axillaris HOM05D006821 ORTHO05D008740 1.6e-98 363.6 325 56.6
Sabra05G0046500 Salix brachista HOM05D006821 ORTHO05D008740 1.6e-98 363.6 382 54.2
PGSC0003DMG400019432 Solanum tuberosum HOM05D006821 ORTHO05D008740 1.7e-97 360.1 330 57.6
Ca_09420_v3 Cicer arietinum L. HOM05D006821 ORTHO05D008740 1.1e-96 357.5 325 58.8
MBI11_g26138_MAGBIO Magnolia biondii HOM05D006821 ORTHO05D008740 3.3e-96 355.9 327 57.2
Phvul.006G101500 Phaseolus vulgaris HOM05D006821 ORTHO05D008740 5.6e-96 355.1 326 57.7
ClCG02G016590 Citrullus lanatus HOM05D006821 ORTHO05D008740 9.6e-96 354.4 329 55.3
Nitab4.5_0001592g0080 Nicotiana tabacum HOM05D006821 ORTHO05D008740 2.1e-95 353.2 344 53.5
CAN.G134.100 Capsicum annuum HOM05D006821 ORTHO05D008740 2.8e-95 352.8 330 55.2
Oeu038441.1 Olea europaea HOM05D006821 ORTHO05D008740 2.8e-95 352.8 329 56.5
PSO461G0046 Papaver somniferum HOM05D006821 ORTHO05D008740 3.6e-95 352.4 328 56.1
CsaV3_2G004180 Cucumis sativus L. HOM05D006821 ORTHO05D008740 1.1e-94 350.9 326 56.1
Sed0012709 Sechium edule HOM05D006821 ORTHO05D008740 3.1e-94 349.4 328 55.2
Sopen01g041020 Solanum pennellii HOM05D006821 ORTHO05D008740 3.1e-94 349.4 327 56.9
AUR62001014 Chenopodium quinoa HOM05D006821 ORTHO05D008740 2.0e-93 346.7 324 54.3
AUR62004944 Chenopodium quinoa HOM05D006821 ORTHO05D008740 2.0e-93 346.7 324 54.0
PSO210G3560 Papaver somniferum HOM05D006821 ORTHO05D008740 4.5e-93 345.5 330 54.2
PSO210G3856 Papaver somniferum HOM05D006821 ORTHO05D008740 4.5e-93 345.5 330 54.2
Solyc01g097350.4 Solanum lycopersicum HOM05D006821 ORTHO05D008740 4.5e-93 345.5 327 56.3
VMungo0540G1649 Vigna mungo HOM05D006821 ORTHO05D008740 9.9e-93 344.4 328 55.8
Lalb_Chr04g0262251 Lupinus albus HOM05D006821 ORTHO05D008740 1.1e-91 340.9 323 53.9
Hund22116 Selenicereus undatus HOM05D006821 ORTHO05D008740 2.1e-90 336.7 322 52.8
THA.LOC104821676 Tarenaya hassleriana HOM05D006821 ORTHO05D008740 2.3e-89 333.2 323 53.6
Medtr7g115070 Medicago truncatula HOM05D006821 ORTHO05D008740 1.6e-87 327.0 329 53.8
Lj7A490T61 Lonicera japonica HOM05D006821 ORTHO05D008740 3.6e-87 325.9 385 49.9
Thhalv10004570m.g Eutrema salsugineum HOM05D006821 ORTHO05D008740 1.1e-86 324.3 329 50.8
Sp2g20040 Schrenkiella parvula HOM05D006821 ORTHO05D008740 2.0e-85 320.1 325 50.5
PGR004G1103 Punica granatum HOM05D006821 ORTHO05D008740 3.4e-85 319.3 319 52.7
Psat2g125040 Pisum sativum HOM05D006821 ORTHO05D008740 4.5e-85 318.9 327 54.7
DCAR_029732 Daucus carota HOM05D006821 ORTHO05D008740 1.3e-84 317.4 329 51.7
BcaB04g19632 Brassica carinata HOM05D006821 ORTHO05D008740 4.9e-84 315.5 327 48.0
Aa31LG11G8550 Aethionema arabicum HOM05D006821 ORTHO05D008740 1.4e-83 313.9 323 49.8
Eucgr.H04340 Eucalyptus grandis HOM05D006821 ORTHO05D008740 1.4e-83 313.9 322 52.5
Carub.0006s2610 Capsella rubella HOM05D006821 ORTHO05D008740 3.2e-83 312.8 328 49.7
EL10Ac4g09134 Beta vulgaris HOM05D006821 ORTHO05D008740 9.3e-83 311.2 401 43.4
BraA09t36137Z Brassica rapa HOM05D006821 ORTHO05D008740 1.6e-82 310.5 328 48.8
A09p04980 Brassica napus HOM05D006821 ORTHO05D008740 1.0e-81 307.8 328 48.8
AT5G28830 Arabidopsis thaliana HOM05D006821 ORTHO05D008740 6.7e-81 305.1 328 48.8
SalBow4G1195 Salvia bowleyana HOM05D006821 ORTHO05D008740 6.7e-81 305.1 328 51.5
SalBow4G2420 Salvia bowleyana HOM05D006821 ORTHO05D008740 6.7e-81 305.1 328 51.5
AL6G40810 Arabidopsis lyrata HOM05D006821 ORTHO05D008740 8.7e-81 304.7 328 48.8
ATR0606G003 Amborella trichopoda HOM05D006821 ORTHO05D008740 1.1e-80 304.3 331 50.2
BolC9t53466H Brassica oleracea HOM05D006821 ORTHO05D008740 1.1e-80 304.3 327 47.7
Migut.N01911 Erythranthe guttata HOM05D006821 ORTHO05D008740 1.1e-80 304.3 327 50.5
BcaC04g23721 Brassica carinata HOM05D006821 ORTHO05D008740 1.5e-80 303.9 327 47.7
C09p05380 Brassica napus HOM05D006821 ORTHO05D008740 1.5e-80 303.9 327 47.7
Dinv04728 Davidia involucrata HOM05D006821 ORTHO05D008740 1.5e-80 303.9 212 71.7
CARHR185340 Cardamine hirsuta HOM05D006821 ORTHO05D008740 8.1e-79 298.1 327 48.0
MELO3C004376.2 Cucumis melo HOM05D006821 ORTHO05D008740 1.4e-78 297.4 326 50.9
Cpa.g.sc117.86 Carica papaya HOM05D006821 ORTHO05D008740 1.8e-78 297.0 300 53.0
TPR.G6944 Trifolium pratense HOM05D006821 ORTHO05D008740 1.3e-76 290.8 250 59.6
CDE07G0065 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 3.9e-73 279.3 327 46.8
CDE04G3363 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 5.1e-73 278.9 331 46.8
SEGI_00561 Sequoiadendron giganteum HOM05D006821 ORTHO05D008740 1.6e-71 273.9 336 48.2
HPP92_024348 Vanilla planifolia HOM05D006821 ORTHO05D008740 5.3e-70 268.9 324 46.0
PSO210G3711 Papaver somniferum HOM05D006821 ORTHO05D008740 5.1e-65 252.3 225 58.2
Nn1g02511 Nelumbo nucifera HOM05D006821 ORTHO05D008740 2.5e-64 250.0 224 58.5
Pp3c20_9750 Physcomitrium patens HOM05D006821 ORTHO05D008740 1.7e-47 194.1 336 36.0
Ah.07g201960 Amaranthus hybridus HOM05D006821 ORTHO05D008740 1.1e-46 191.4 325 34.8
Mapoly0083s0056 Marchantia polymorpha HOM05D006821 ORTHO05D008740 7.7e-45 185.3 340 33.5
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 3.4e-32 143.3 335 31.3
SMO259G0008 Selaginella moellendorffii HOM05D006821 ORTHO05D008740 7.5e-32 142.1 227 36.1
CBR_g10979 Chara braunii HOM05D006821 ORTHO05D008740 5.4e-30 136.0 256 33.6
Sc18g0006740 Simmondsia chinensis HOM05D004759 ORTHO05D005722 2.3e-17 94.0 305 28.5
AagrBONN_evm.TU.Sc2ySwM_228.4145 Anthoceros agrestis HOM05D006821 ORTHO05D008740 6.8e-17 92.4 139 35.3
Prupe.8G158800 Prunus persica HOM05D004759 ORTHO05D005722 6.8e-17 92.4 305 26.6
COL.COLO4_17240 Corchorus olitorius HOM05D004759 ORTHO05D005722 7.5e-16 89.0 304 26.6
GSVIVG01024116001 Vitis vinifera HOM05D004759 ORTHO05D005722 4.9e-15 86.3 300 27.0
CANSAT25G1906 Cannabis sativa HOM05D004759 ORTHO05D005722 4.1e-14 83.2 291 26.8
Gohir.A03G202700 Gossypium hirsutum HOM05D004759 ORTHO05D005722 5.4e-14 82.8 306 25.5
Hma1.2p1_0032F.1_g019720 Hydrangea macrophylla HOM05D004759 ORTHO05D005722 1.6e-13 81.3 287 26.1
Gorai.008G032900 Gossypium raimondii HOM05D004759 ORTHO05D005722 2.0e-13 80.9 257 27.2
PGR042G1303 Punica granatum HOM05D004759 ORTHO05D005722 2.0e-13 80.9 305 25.2
MD05G1114400 Malus domestica HOM05D004759 ORTHO05D005722 3.5e-13 80.1 305 26.6
TAR365G0108 Trochodendron aralioides HOM05D006821 ORTHO05D008740 3.5e-13 80.1 142 40.1
MD10G1116400 Malus domestica HOM05D004759 ORTHO05D005722 5.9e-13 79.3 304 27.6
CARHR032970 Cardamine hirsuta HOM05D006821 ORTHO05D008740 7.8e-13 79.0 80 48.8
Glyma.04G006200 Glycine max HOM05D004759 ORTHO05D005722 1.0e-12 78.6 286 25.2
Aqoxy5G01775 Aquilegia oxysepala HOM05D004759 ORTHO05D005722 1.7e-12 77.8 244 26.2
Os03g0250000 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 1.7e-12 77.8 265 26.4
Hund06394 Selenicereus undatus HOM05D004759 ORTHO05D005722 1.7e-12 77.8 281 24.9
Ciclev10028685m.g Citrus clementina HOM05D004759 ORTHO05D005722 5.0e-12 76.3 303 23.8
Lsat_1_v5_gn_8_126780 Lactuca sativa HOM05D004759 ORTHO05D005722 6.6e-12 75.9 283 24.4
Cc02_g16670 Coffea canephora HOM05D004759 ORTHO05D005722 8.6e-12 75.5 299 24.7
MBI05_g15352_MAGBIO Magnolia biondii HOM05D004759 ORTHO05D005722 1.1e-11 75.1 307 25.7
MSTRG.5434 Avicennia marina HOM05D004759 ORTHO05D005722 3.3e-11 73.6 302 27.8
HanXRQChr17g0555191 Helianthus annuus HOM05D004759 ORTHO05D005722 3.3e-11 73.6 299 25.4
TWI79G0483 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 3.3e-11 73.6 303 23.8
TAR628G0309 Trochodendron aralioides HOM05D004759 ORTHO05D005722 4.3e-11 73.2 263 25.5
SGA_v2.0_scaffold32G13244 Striga asiatica HOM05D004759 ORTHO05D005722 2.8e-10 70.5 274 23.7
unitig_899.g15603 Utricularia gibba HOM05D004759 ORTHO05D005722 3.6e-10 70.1 298 23.5
Migut.B00161 Erythranthe guttata HOM05D004759 ORTHO05D005722 1.8e-09 67.8 272 23.5
ECA233G0594 Erigeron canadensis HOM05D004759 ORTHO05D005722 3.1e-09 67.0 299 24.4
Sed0015502 Sechium edule HOM05D004759 ORTHO05D005722 3.1e-09 67.0 290 24.8
SEGI_27774 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 4.0e-09 66.6 291 23.7
Hund00052 Selenicereus undatus HOM05D004759 ORTHO05D005722 8.9e-09 65.5 287 24.7
MELO3C028972.2 Cucumis melo HOM05D006821 ORTHO05D034973 1.5e-08 64.7 98 39.8
MSTRG.16864 Avicennia marina HOM05D004759 ORTHO05D005722 2.6e-08 63.9 286 23.8
SEGI_06358 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 1.3e-07 61.6 292 22.6
EL10Ac9g21461 Beta vulgaris HOM05D004759 ORTHO05D005722 1.9e-06 57.8 229 23.1
AUR62013108 Chenopodium quinoa HOM05D004759 ORTHO05D005722 3.2e-06 57.0 226 22.1
Lj5A186G40 Lonicera japonica HOM05D004759 ORTHO05D005722 3.2e-06 57.0 225 23.6
TPR.G24580 Trifolium pratense HOM05D006821 ORTHO05D008740 3.2e-06 57.0 102 39.2
Ah.01g009490 Amaranthus hybridus HOM05D004759 ORTHO05D005722 4.1e-06 56.6 228 23.7
Sabra13G0037400 Salix brachista HOM05D006821 ORTHO05D349522 4.1e-06 56.6 55 56.4
CDE02G2774 Ceratophyllum demersum HOM05D004759 ORTHO05D005722 5.4e-06 56.2 266 20.3
arahy.Tifrunner.gnm1.ann1.R4GM9V Arachis hypogaea HOM05D004759 ORTHO05D005722 9.2e-06 55.5 229 24.9


User provided reference genes

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