Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 0.0e+00 1515.4 757 100.0
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 0.0e+00 1134.8 726 76.9
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 7.2e-304 1047.0 730 71.6
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 3.3e-301 1038.1 722 70.8
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 2.0e-298 1028.9 730 70.0
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 7.7e-298 1026.9 727 68.6
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 1.0e-297 1026.5 730 70.1
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 2.9e-297 1025.0 733 70.1
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.8e-297 1024.6 730 69.5
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 8.5e-297 1023.5 730 69.5
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 8.5e-297 1023.5 730 69.7
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 1.1e-296 1023.1 727 69.5
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 2.5e-296 1021.9 725 68.1
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.2e-296 1021.1 730 67.8
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 4.2e-296 1021.1 726 69.4
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 5.5e-296 1020.8 725 67.9
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 9.4e-296 1020.0 713 70.7
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 1.5e-293 1012.7 725 67.2
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 2.6e-293 1011.9 725 67.2
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 2.6e-293 1011.9 733 67.9
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 2.8e-292 1008.4 730 68.5
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 1.8e-291 1005.7 760 66.2
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 6.9e-291 1003.8 734 68.5
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 4.5e-290 1001.1 728 67.4
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 4.5e-290 1001.1 728 67.7
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 4.5e-290 1001.1 727 66.9
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 4.5e-290 1001.1 730 68.1
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 2.2e-289 998.8 725 66.3
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 3.8e-289 998.0 732 66.7
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.1e-288 996.5 732 66.4
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 1.4e-288 996.1 724 66.2
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 5.5e-288 994.2 730 65.9
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.6e-287 992.6 732 66.8
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 2.7e-287 991.9 725 67.0
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 1.5e-285 986.1 728 66.3
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 1.7e-284 982.6 756 64.6
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 7.0e-283 977.2 733 65.2
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 5.9e-282 974.2 664 73.5
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 7.7e-282 973.8 726 64.7
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 7.7e-282 973.8 730 65.8
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 1.4e-278 963.0 728 65.1
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 1.4e-278 963.0 723 65.0
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 1.5e-277 959.5 731 65.0
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 2.0e-277 959.1 727 64.5
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 2.6e-277 958.7 723 64.7
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.6e-277 958.7 729 65.4
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 9.7e-277 956.8 728 64.8
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 4.8e-276 954.5 730 64.2
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 1.1e-275 953.4 731 64.2
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 1.4e-275 953.0 741 64.1
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 1.6e-274 949.5 731 64.7
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 4.5e-274 948.0 726 64.5
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 7.7e-274 947.2 722 65.2
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 2.2e-273 945.7 728 63.9
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 5.0e-273 944.5 728 64.0
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 1.1e-272 943.3 732 64.9
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 4.2e-272 941.4 730 64.5
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 5.5e-272 941.0 730 64.4
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 4.7e-271 937.9 729 64.1
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 1.0e-270 936.8 727 63.1
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 1.4e-270 936.4 733 64.7
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 4.0e-270 934.9 719 63.8
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.4e-269 931.4 727 63.8
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 2.2e-268 929.1 728 62.5
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 2.7e-266 922.2 800 58.4
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 3.8e-265 918.3 653 67.8
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 2.5e-264 915.6 698 65.6
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 8.0e-263 910.6 728 62.5
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 6.8e-262 907.5 671 65.6
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 7.8e-258 894.0 736 62.2
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 1.1e-256 890.2 699 62.5
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 2.2e-252 875.9 699 61.7
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 8.6e-241 837.4 622 67.8
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.5e-240 836.6 495 81.6
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 1.2e-239 833.6 609 66.8
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.6e-239 833.2 752 56.9
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 4.4e-237 825.1 734 58.3
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 1.3e-236 823.5 721 57.8
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 3.7e-236 822.0 605 66.1
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 1.9e-235 819.7 719 60.1
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 6.6e-233 811.2 606 65.3
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 8.9e-230 800.8 733 57.7
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.4e-227 793.5 710 57.3
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 2.1e-226 789.6 638 61.8
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 3.9e-225 785.4 727 54.7
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 1.4e-222 776.9 762 54.7
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 3.1e-222 775.8 742 53.0
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 5.2e-222 775.0 826 52.5
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 7.9e-210 734.6 637 58.9
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 5.5e-203 711.8 623 59.2
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 8.7e-201 704.5 727 51.4
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 6.2e-199 698.4 619 56.2
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 1.1e-195 687.6 619 57.5
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 3.2e-195 686.0 492 66.1
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.8e-182 643.7 453 66.7
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 3.8e-180 636.0 454 66.7
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 3.4e-173 612.8 527 60.0
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 3.9e-169 599.4 731 47.2
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 2.8e-167 593.2 420 71.0
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 3.2e-163 579.7 743 44.4
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 3.8e-156 556.2 600 48.7
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 1.9e-139 500.7 446 58.5
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 6.4e-135 485.7 579 44.4
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 5.2e-129 466.1 632 44.6
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 5.8e-120 436.0 381 58.5
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 2.2e-119 434.1 838 35.0
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 5.2e-113 412.9 346 60.1
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 8.9e-113 412.1 290 68.6
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 4.9e-111 406.4 539 41.9
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 9.2e-110 402.1 479 44.3
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 7.3e-99 365.9 467 42.4
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 8.7e-92 342.4 226 70.8
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 6.9e-81 306.2 235 68.9
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.2e-62 243.8 185 63.2
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 7.9e-61 239.6 665 31.1
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.5e-56 224.2 125 74.4
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 4.5e-56 223.8 316 41.8
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 7.7e-56 223.0 261 44.1
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.2e-50 204.9 141 69.5
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 3.7e-50 204.1 284 35.9
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 5.3e-49 200.3 199 57.3
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 3.5e-48 197.6 125 70.4
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.4e-43 180.6 125 67.2
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.2e-35 156.0 114 57.9
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 9.1e-33 146.4 101 69.3
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 4.2e-30 137.5 105 61.9
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.7e-29 134.0 168 45.8
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 2.2e-26 125.2 131 48.1
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 1.3e-23 115.9 151 47.0
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 1.8e-20 105.5 78 65.4
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 1.2e-16 92.8 66 59.1
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 1.3e-15 89.4 91 57.1
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 3.9e-15 87.8 296 27.4
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 4.3e-14 84.3 61 57.4
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 1.3e-10 72.8 44 72.7
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 1.7e-10 72.4 93 46.2
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 4.9e-10 70.9 60 53.3
arahy.Tifrunner.gnm1.ann1.1SX7LU Arachis hypogaea HOM05D005479 ORTHO05D019704 9.2e-09 66.6 79 50.6
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 1.6e-08 65.9 44 68.2
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 2.7e-08 65.1 43 62.8
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 1.3e-07 62.8 39 66.7
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 1.9e-06 58.9 52 63.5


User provided reference genes

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