Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 1.0e-168 596.7 303 100.0
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 8.7e-152 540.4 302 89.4
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 2.0e-148 529.3 300 88.3
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 7.6e-148 527.3 301 88.4
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 3.8e-147 525.0 303 87.5
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 6.5e-147 524.2 300 86.7
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.9e-146 522.7 300 86.3
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 4.2e-146 521.5 300 86.3
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 2.1e-145 519.2 300 85.3
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 3.5e-145 518.5 300 85.7
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 3.5e-145 518.5 300 85.3
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 4.6e-145 518.1 300 86.0
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 1.3e-144 516.5 303 84.5
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 3.0e-144 515.4 303 86.5
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 3.9e-144 515.0 303 83.8
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 6.7e-144 514.2 300 85.3
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 8.7e-144 513.8 300 84.3
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 1.9e-143 512.7 303 83.8
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 2.5e-143 512.3 316 81.6
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 4.3e-143 511.5 300 84.7
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 5.7e-143 511.1 303 84.2
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 2.8e-142 508.8 303 83.5
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 2.8e-142 508.8 303 85.8
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 3.7e-142 508.4 303 82.8
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 6.3e-142 507.7 303 83.8
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 8.2e-142 507.3 303 83.2
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 8.2e-142 507.3 301 83.4
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 1.8e-141 506.1 303 84.5
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 1.8e-141 506.1 303 82.8
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 5.3e-141 504.6 303 82.5
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 1.5e-140 503.1 301 82.1
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.5e-140 503.1 303 81.5
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.5e-140 503.1 301 83.1
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.4e-140 501.9 303 83.2
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 1.3e-139 500.0 303 82.2
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 2.9e-139 498.8 303 81.8
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 2.9e-139 498.8 303 82.5
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 2.9e-139 498.8 302 82.5
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 3.8e-139 498.4 303 81.2
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 3.8e-139 498.4 303 81.8
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 5.0e-139 498.0 303 82.5
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 5.0e-139 498.0 303 82.2
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 8.5e-139 497.3 303 81.2
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 8.5e-139 497.3 303 81.8
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 8.5e-139 497.3 303 81.2
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.1e-138 496.9 300 82.0
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 2.5e-138 495.7 300 80.3
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 3.2e-138 495.4 305 82.3
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 4.2e-138 495.0 303 80.9
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 7.2e-138 494.2 301 82.4
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 9.3e-138 493.8 300 81.3
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 1.2e-137 493.4 303 82.5
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.2e-137 493.4 299 82.3
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 1.2e-137 493.4 303 80.9
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 1.6e-137 493.0 301 80.4
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.6e-137 493.0 303 81.2
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 2.7e-137 492.3 302 82.5
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 2.7e-137 492.3 302 82.5
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.7e-137 492.3 299 81.9
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 3.6e-137 491.9 303 80.9
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 3.6e-137 491.9 301 80.1
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 4.6e-137 491.5 302 82.1
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 4.6e-137 491.5 301 80.4
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 7.9e-137 490.7 302 80.1
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 7.9e-137 490.7 300 79.3
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 1.0e-136 490.3 300 80.0
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 1.3e-136 490.0 303 81.5
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.8e-136 489.6 297 82.2
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 1.8e-136 489.6 300 79.3
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 2.3e-136 489.2 302 79.8
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 3.0e-136 488.8 303 81.2
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 3.9e-136 488.4 303 80.9
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 5.1e-136 488.0 303 80.9
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 1.1e-135 486.9 303 81.8
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 1.1e-135 486.9 302 81.5
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 1.9e-135 486.1 303 80.9
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 2.5e-135 485.7 300 79.0
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 4.3e-135 485.0 300 79.3
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 1.6e-134 483.0 303 78.9
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 3.7e-134 481.9 301 78.1
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 3.7e-134 481.9 301 79.4
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 8.2e-134 480.7 299 78.9
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 1.1e-133 480.3 303 77.6
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 1.1e-133 480.3 303 80.5
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 1.1e-133 480.3 303 77.9
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 1.1e-133 480.3 300 78.7
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 4.1e-133 478.4 300 78.3
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 1.2e-132 476.9 321 75.1
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 2.6e-132 475.7 303 77.9
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 2.6e-132 475.7 303 78.5
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 2.9e-131 472.2 299 78.3
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 3.8e-131 471.9 299 77.3
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 5.0e-131 471.5 303 79.2
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 8.5e-131 470.7 316 75.9
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 1.9e-130 469.5 300 77.3
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 2.5e-130 469.2 303 76.9
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 3.2e-130 468.8 302 77.8
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 3.2e-130 468.8 303 76.9
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 4.2e-130 468.4 300 76.3
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 5.5e-130 468.0 303 78.5
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 7.2e-130 467.6 303 75.2
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 1.2e-129 466.8 303 77.6
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 1.2e-129 466.8 303 77.9
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 2.1e-129 466.1 300 77.7
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 3.6e-129 465.3 300 77.0
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 8.8e-128 460.7 300 75.3
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 1.1e-127 460.3 300 76.0
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 2.8e-126 455.7 340 70.3
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 4.8e-126 454.9 299 74.6
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.1e-125 453.8 338 70.7
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 1.8e-125 453.0 291 75.9
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 6.9e-125 451.1 306 74.2
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 4.5e-124 448.4 301 75.1
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 6.1e-121 438.0 249 85.9
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 4.4e-119 431.8 259 81.5
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 9.7e-119 430.6 256 82.8
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 7.7e-116 421.0 301 72.8
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 1.5e-114 416.8 300 70.0
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 1.5e-114 416.8 293 69.3
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 1.2e-113 413.7 299 65.6
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 2.1e-113 412.9 312 69.6
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 2.1e-113 412.9 340 62.6
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 5.7e-111 404.8 293 67.6
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 4.8e-110 401.7 288 68.8
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 5.0e-107 391.7 303 67.3
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.5e-106 389.4 300 69.0
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 6.3e-102 374.8 299 62.2
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 3.1e-101 372.5 509 45.0
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 2.0e-100 369.8 298 63.1
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 1.1e-98 364.0 209 85.2
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 1.5e-98 363.6 200 92.5
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 1.4e-96 357.1 291 59.1
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 2.3e-96 356.3 209 82.8
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 3.7e-94 349.0 220 80.5
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 4.0e-80 302.4 239 68.2
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.7e-75 287.0 245 64.1
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.9e-75 285.8 246 57.3
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 1.5e-74 283.9 293 49.5
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 4.7e-65 252.3 154 83.1
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 3.2e-53 213.0 281 41.3
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 4.6e-52 209.1 298 40.3
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.8e-46 189.5 148 59.5
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 5.1e-43 179.1 108 79.6
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 9.9e-39 164.9 101 78.2
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 8.7e-35 151.8 196 48.0
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 9.6e-34 148.3 84 82.1
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 9.0e-32 141.7 84 81.0
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 8.2e-25 118.6 83 73.5
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 6.5e-22 109.0 237 27.8
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 4.2e-21 106.3 70 72.9
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.6e-20 104.4 148 41.2
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 2.1e-20 104.0 146 39.7
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 1.8e-19 100.9 87 64.4
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 3.0e-19 100.1 63 71.4
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 1.7e-17 94.4 86 60.5
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 1.1e-16 91.7 121 47.1
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 6.7e-11 72.4 54 72.2
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 3.1e-08 63.5 63 55.6
Sp1g08890 Schrenkiella parvula HOM05D000111 ORTHO05D013786 4.5e-07 59.7 63 55.6
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 1.0e-06 58.5 40 67.5


User provided reference genes

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