Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 0.0e+00 1211.8 729 100.0
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 1.2e-244 850.1 710 74.1
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 3.0e-243 845.5 682 75.4
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 5.2e-211 738.4 734 68.4
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 1.9e-205 719.9 715 66.7
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 1.9e-205 719.9 715 66.7
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.8e-203 713.4 659 65.1
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 1.3e-196 690.6 678 60.6
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 6.2e-196 688.3 726 65.2
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 6.9e-195 684.9 707 64.4
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 7.6e-194 681.4 722 58.3
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 3.8e-193 679.1 722 64.5
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 1.1e-192 677.6 698 64.3
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 6.0e-191 671.8 700 62.3
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 3.0e-190 669.5 696 62.2
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 2.5e-189 666.4 687 62.2
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 6.5e-185 651.7 708 62.7
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 2.5e-184 649.8 721 60.5
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 7.1e-184 648.3 737 57.0
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 1.6e-183 647.1 728 59.3
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 2.7e-183 646.4 725 57.4
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.3e-182 644.0 705 58.6
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 1.6e-180 637.1 723 60.4
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 1.5e-178 630.6 684 61.0
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 2.6e-178 629.8 701 59.1
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 4.2e-176 622.5 697 60.7
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 1.2e-175 620.9 712 58.0
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 3.9e-174 615.9 717 58.7
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 5.1e-174 615.5 731 54.9
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 2.2e-172 610.1 725 56.6
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 1.8e-171 607.1 730 59.9
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 2.4e-171 606.7 726 58.3
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 1.0e-169 601.3 692 59.7
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 2.2e-169 600.1 735 58.2
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 1.4e-168 597.4 740 55.7
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 3.2e-168 596.3 732 56.4
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 7.2e-168 595.1 525 62.9
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 6.7e-166 588.6 718 58.1
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 2.5e-165 586.6 742 56.7
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 1.2e-162 577.8 735 58.2
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 5.9e-162 575.5 695 55.7
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 7.7e-162 575.1 684 57.2
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 9.4e-160 568.2 725 53.9
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 2.7e-159 566.6 647 59.5
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 6.1e-159 565.5 689 60.2
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 4.4e-157 559.3 686 55.8
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 1.8e-155 553.9 713 53.9
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 3.1e-155 553.1 667 55.2
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 2.0e-154 550.4 681 54.8
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 1.3e-153 547.7 676 58.6
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 8.5e-153 545.0 680 52.9
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 1.5e-152 544.3 692 51.7
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 1.6e-151 540.8 693 54.8
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 3.0e-150 536.6 692 53.8
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 1.5e-149 534.3 712 54.1
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 1.3e-148 531.2 525 59.2
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 3.7e-148 529.6 735 50.3
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 8.2e-148 528.5 716 53.5
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 1.1e-147 528.1 723 53.4
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.4e-147 526.9 706 54.2
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 1.0e-145 521.5 680 55.4
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 5.5e-144 515.8 762 45.8
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 5.5e-144 515.8 724 49.9
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 1.6e-143 514.2 657 54.6
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 3.0e-142 510.0 733 52.9
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 2.2e-140 503.8 729 52.7
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 4.1e-139 499.6 672 54.8
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 4.1e-139 499.6 746 46.5
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 1.6e-138 497.7 697 54.7
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 2.7e-138 496.9 711 52.9
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 5.9e-138 495.7 742 50.3
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 1.7e-137 494.2 721 51.6
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 1.4e-134 484.6 571 53.4
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 5.7e-133 479.2 716 48.2
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 3.7e-132 476.5 700 48.3
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 1.0e-129 468.4 720 50.0
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 2.5e-128 463.8 520 53.1
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 5.6e-128 462.6 516 54.1
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 2.1e-127 460.7 648 51.9
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 4.7e-127 459.5 506 56.1
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 1.7e-124 451.1 323 74.3
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 6.4e-124 449.1 518 53.3
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 9.2e-123 445.3 752 50.0
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.3e-121 440.7 420 61.7
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 5.0e-121 439.5 686 49.9
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 9.5e-120 435.3 708 49.7
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 4.4e-117 426.4 711 47.8
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 3.7e-116 423.3 710 47.0
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 2.0e-114 417.5 697 51.2
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 1.0e-113 415.2 705 49.9
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 8.6e-113 412.1 643 42.9
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 2.5e-112 410.6 690 43.9
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 3.3e-112 410.2 696 49.9
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 5.6e-112 409.5 705 49.9
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 3.6e-111 406.8 529 49.3
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 1.4e-110 404.8 700 48.9
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 1.4e-110 404.8 375 64.0
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 1.5e-109 401.4 715 47.8
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.2e-103 381.7 719 41.4
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 2.9e-100 370.5 389 65.3
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 6.4e-100 369.4 628 44.4
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 7.3e-96 355.9 546 44.5
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 1.6e-95 354.8 716 41.8
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 4.0e-94 350.1 614 44.3
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 8.9e-94 349.0 717 44.2
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.5e-93 348.2 716 38.7
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 2.9e-84 317.4 548 39.1
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 9.3e-83 312.4 238 72.7
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 5.8e-77 293.1 485 43.5
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 9.3e-75 285.8 333 62.5
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 1.0e-68 265.8 858 29.3
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 4.1e-62 243.8 192 66.1
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 2.9e-60 237.7 299 52.8
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 3.2e-59 234.2 195 61.0
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 9.3e-59 232.6 253 60.9
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 2.8e-55 221.1 693 30.2
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.7e-52 211.8 521 34.7
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 2.5e-51 208.0 264 53.8
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 1.2e-45 189.1 578 29.8
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 2.6e-45 188.0 270 47.4
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 7.9e-42 176.4 200 50.0
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 4.4e-40 170.6 263 45.2
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 1.8e-38 165.2 681 27.9
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 5.9e-37 160.2 895 27.5
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 4.1e-30 137.5 111 63.1
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 1.2e-26 125.9 186 47.3
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 4.0e-25 120.9 178 56.7
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 5.2e-25 120.6 288 38.2
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 7.5e-24 116.7 119 54.6
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 6.3e-23 113.6 102 61.8
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 5.4e-22 110.5 99 51.5
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 9.1e-22 109.8 143 46.2
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 2.2e-20 105.1 289 32.9
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 1.9e-19 102.1 278 29.5
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.9e-19 102.1 71 71.8
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 2.5e-19 101.7 82 61.0
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 4.0e-17 94.4 153 43.8
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 6.3e-15 87.0 87 58.6
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 3.1e-14 84.7 105 51.4
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 4.1e-14 84.3 167 38.9
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 5.4e-14 84.0 82 57.3
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 5.9e-13 80.5 60 68.3
COL.COLO4_33622 Corchorus olitorius HOM05D004723 ORTHO05D006176 7.8e-13 80.1 71 59.2
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 1.1e-11 76.3 213 30.5
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 7.3e-11 73.6 61 59.0
FAN17G1680 Fragaria x ananassa HOM05D032679 ORTHO05D022627 1.5e-08 65.9 79 44.3
FAN24G3340 Fragaria x ananassa HOM05D032679 ORTHO05D022627 1.5e-08 65.9 79 44.3
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 2.0e-08 65.5 48 58.3
FAN18G3965 Fragaria x ananassa HOM05D032679 ORTHO05D022627 7.5e-08 63.5 79 43.0
C03p39770 Brassica napus HOM05D059891 ORTHO05D040930 2.2e-07 62.0 69 49.3
FAN22G1655 Fragaria x ananassa HOM05D002244 ORTHO05D035452 3.7e-07 61.2 60 50.0
Eucgr.C02078 Eucalyptus grandis HOM05D000238 ORTHO05D010253 8.3e-07 60.1 78 47.4
FAN03G2005 Fragaria x ananassa HOM05D004723 ORTHO05D002269 8.3e-07 60.1 60 48.3
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 2.4e-06 58.5 72 50.0
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 3.2e-06 58.2 88 46.6


User provided reference genes

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