Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 6.1e-258 893.6 453 100.0
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 2.0e-229 798.9 462 87.9
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 4.5e-221 771.2 458 87.1
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 2.5e-219 765.4 453 86.3
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 1.5e-216 756.1 467 83.3
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 2.5e-211 738.8 462 82.0
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 4.0e-209 731.5 462 81.8
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 2.6e-208 728.8 461 82.0
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 1.3e-207 726.5 456 82.0
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 6.4e-207 724.2 458 81.2
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 1.7e-204 716.1 458 80.8
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 2.3e-204 715.7 455 81.8
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 5.0e-204 714.5 436 83.5
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 8.6e-204 713.8 462 79.9
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 8.6e-204 713.8 455 81.8
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 1.9e-203 712.6 452 81.2
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 2.5e-203 712.2 453 79.7
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 4.3e-203 711.4 462 79.4
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 6.2e-202 707.6 461 80.0
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 8.0e-202 707.2 459 80.0
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.1e-201 706.8 456 80.5
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 3.1e-201 705.3 459 79.5
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 1.5e-200 703.0 459 78.9
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 1.5e-200 703.0 456 79.6
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.0e-200 702.6 378 91.5
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 4.4e-200 701.4 423 84.4
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 1.3e-199 699.9 452 80.3
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 3.7e-199 698.4 454 80.2
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 3.7e-199 698.4 454 80.2
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 8.3e-199 697.2 453 79.2
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 2.4e-198 695.7 390 87.7
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 9.2e-198 693.7 453 77.9
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 9.2e-198 693.7 456 79.4
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 1.6e-197 693.0 453 77.3
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 6.0e-197 691.0 454 78.6
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 7.8e-197 690.6 449 78.6
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 1.0e-196 690.3 458 78.4
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.3e-196 689.9 453 77.5
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 1.3e-196 689.9 441 80.3
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 1.3e-196 689.9 449 81.3
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 3.0e-196 688.7 390 87.2
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 3.9e-196 688.3 387 87.9
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 3.9e-196 688.3 424 81.6
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 5.0e-196 688.0 456 78.9
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 6.6e-196 687.6 424 81.4
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 8.6e-196 687.2 383 86.4
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 1.9e-195 686.0 428 81.5
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.5e-195 685.6 453 77.3
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 2.5e-195 685.6 435 80.9
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 4.3e-195 684.9 437 79.9
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 4.3e-195 684.9 457 78.1
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 7.3e-195 684.1 447 78.5
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 9.5e-195 683.7 384 87.8
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 9.5e-195 683.7 460 76.5
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.2e-194 683.3 460 77.0
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.6e-194 681.8 466 75.1
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 3.6e-194 681.8 506 71.1
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 6.2e-194 681.0 460 77.6
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 1.1e-193 680.2 435 80.5
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 1.4e-193 679.9 456 77.6
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 1.4e-193 679.9 454 75.8
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 2.3e-193 679.1 453 76.8
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 4.0e-193 678.3 452 77.4
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 5.2e-193 677.9 455 76.9
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 6.8e-193 677.6 453 77.5
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 8.9e-193 677.2 456 76.3
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 8.9e-193 677.2 456 76.3
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 8.9e-193 677.2 416 82.0
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 1.5e-192 676.4 412 81.6
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 2.0e-192 676.0 453 77.3
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 2.0e-192 676.0 449 77.3
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 3.4e-192 675.2 455 76.7
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 4.4e-192 674.9 422 81.8
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 7.5e-192 674.1 452 76.8
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 7.5e-192 674.1 456 76.8
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 9.9e-192 673.7 456 76.8
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 9.9e-192 673.7 392 84.7
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 1.3e-191 673.3 452 76.8
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 2.2e-191 672.5 474 74.7
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 3.7e-191 671.8 433 79.2
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 3.7e-191 671.8 422 80.3
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 4.9e-191 671.4 411 82.0
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 6.4e-191 671.0 383 85.6
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 1.4e-190 669.8 436 77.1
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 1.9e-190 669.5 445 75.5
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 1.2e-189 666.8 436 76.8
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 2.7e-189 665.6 378 87.3
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 1.0e-188 663.7 424 78.3
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 1.7e-188 662.9 445 76.0
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 3.0e-188 662.1 461 74.8
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 3.9e-188 661.8 384 83.6
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 5.1e-188 661.4 453 75.7
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 1.9e-187 659.4 458 75.1
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 1.9e-187 659.4 458 74.9
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 3.3e-187 658.7 421 80.0
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 2.8e-186 655.6 372 85.2
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 4.4e-184 648.3 415 78.8
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 4.9e-183 644.8 384 83.3
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 4.1e-182 641.7 400 80.5
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 6.0e-181 637.9 405 77.0
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 1.0e-180 637.1 405 76.8
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 1.3e-180 636.7 455 75.2
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 9.9e-176 620.5 328 93.6
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 1.7e-172 609.8 386 75.4
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 3.1e-169 599.0 385 74.0
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 9.0e-169 597.4 364 78.6
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 3.4e-168 595.5 466 65.2
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.9e-167 592.4 440 71.8
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 7.1e-158 561.2 389 75.3
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 3.5e-157 558.9 372 73.7
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 4.6e-157 558.5 424 66.5
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 1.1e-155 553.9 434 68.9
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 8.2e-154 547.7 287 92.7
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.7e-146 522.3 287 87.8
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 1.1e-145 520.8 395 66.6
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 2.0e-144 516.5 417 65.2
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 3.4e-144 515.8 348 79.0
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 2.3e-140 503.1 376 71.0
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 1.5e-139 500.4 432 59.0
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 1.0e-132 477.6 350 73.7
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 9.7e-131 471.1 378 61.1
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 1.8e-124 450.3 233 94.4
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.4e-121 440.7 295 74.2
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 3.3e-115 419.5 449 55.0
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 2.8e-114 416.4 314 68.2
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 6.3e-98 362.1 224 76.3
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.6e-88 330.9 256 68.0
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 3.9e-79 299.7 187 73.3
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 1.5e-78 297.7 299 48.8
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 2.6e-75 287.0 273 58.2
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 4.4e-75 286.2 246 61.0
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 8.3e-74 282.0 161 85.7
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 3.1e-68 263.5 351 43.9
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 1.5e-67 261.2 212 69.3
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 8.1e-53 212.2 367 40.1
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 8.4e-50 202.2 219 55.7
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 3.3e-46 190.3 184 59.2
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 4.8e-45 186.4 113 76.1
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 1.8e-28 131.3 77 79.2
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.8e-28 131.3 83 71.1
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.8e-28 131.3 83 71.1
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 2.5e-25 120.9 129 53.5
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 2.5e-25 120.9 129 53.5
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 6.7e-23 112.8 113 53.1
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 3.3e-22 110.5 73 72.6
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 2.4e-20 104.4 73 68.5
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.1e-20 104.0 69 69.6
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 2.5e-09 67.8 37 81.1
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 3.2e-09 67.4 110 41.8


User provided reference genes

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