Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 2.4e-245 851.7 404 100.0
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 1.1e-231 806.2 403 95.0
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 1.7e-227 792.3 404 92.8
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 1.4e-226 789.3 403 92.8
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 3.2e-226 788.1 404 91.1
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 2.1e-225 785.4 404 91.6
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 1.8e-224 782.3 404 92.3
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 2.1e-222 775.4 404 91.1
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 3.7e-222 774.6 404 90.8
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 3.7e-222 774.6 404 90.8
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 3.7e-222 774.6 404 90.6
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 1.8e-221 772.3 405 91.6
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 2.4e-221 771.9 403 90.8
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 2.4e-221 771.9 406 89.7
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 4.0e-221 771.2 406 90.6
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 5.3e-221 770.8 404 91.6
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 2.0e-220 768.8 401 91.5
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 2.0e-220 768.8 402 89.6
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 5.8e-220 767.3 406 89.9
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 7.6e-220 766.9 406 89.9
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 1.3e-219 766.1 403 90.1
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 1.3e-219 766.1 403 90.3
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 1.7e-219 765.8 402 90.0
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 2.2e-219 765.4 402 89.6
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 1.9e-218 762.3 406 88.9
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 3.2e-218 761.5 403 89.6
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 3.2e-218 761.5 406 88.9
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 4.2e-218 761.1 406 89.2
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 5.5e-218 760.8 405 89.4
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 7.1e-218 760.4 402 91.0
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 7.1e-218 760.4 404 89.9
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 1.2e-217 759.6 416 89.2
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 1.6e-217 759.2 406 89.9
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 1.6e-217 759.2 418 86.6
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 2.1e-217 758.8 403 90.1
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 3.5e-217 758.1 391 92.1
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 4.6e-217 757.7 404 89.4
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 4.6e-217 757.7 404 89.6
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 6.0e-217 757.3 402 90.5
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 6.0e-217 757.3 404 89.9
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 1.3e-216 756.1 411 88.8
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 1.5e-215 752.7 410 87.3
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 1.9e-215 752.3 402 88.1
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 2.5e-215 751.9 403 89.1
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 3.3e-215 751.5 403 89.6
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 4.3e-215 751.1 403 88.1
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 9.6e-215 750.0 404 88.6
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 2.1e-214 748.8 403 88.1
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 4.8e-214 747.7 404 88.9
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 8.2e-214 746.9 405 87.4
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 1.4e-213 746.1 435 83.9
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 1.8e-213 745.7 402 86.8
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 2.4e-213 745.3 392 90.3
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 6.9e-213 743.8 391 90.5
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 1.5e-212 742.7 404 87.6
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 1.5e-212 742.7 404 87.6
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 2.0e-212 742.3 404 85.6
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 5.9e-212 740.7 405 86.2
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 1.3e-211 739.6 405 85.2
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 2.2e-211 738.8 405 85.4
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 3.8e-211 738.0 404 86.6
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 5.0e-211 737.6 404 86.9
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 5.0e-211 737.6 410 86.3
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 1.1e-210 736.5 398 87.9
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 1.4e-210 736.1 404 86.9
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 2.5e-210 735.3 404 84.9
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 5.5e-210 734.2 433 82.0
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 7.2e-210 733.8 403 86.6
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 9.3e-210 733.4 397 87.2
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 1.2e-209 733.0 391 88.5
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 1.6e-209 732.6 404 85.9
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 1.8e-208 729.2 396 87.9
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 1.8e-208 729.2 389 88.2
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 2.3e-208 728.8 415 84.8
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 3.3e-207 724.9 403 84.9
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 7.4e-207 723.8 404 84.4
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 9.7e-207 723.4 398 85.9
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 2.2e-206 722.2 403 86.8
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 2.4e-205 718.8 403 86.4
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 5.3e-205 717.6 399 85.2
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 2.6e-204 715.3 386 85.8
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 2.6e-204 715.3 386 85.8
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.7e-203 712.6 389 85.9
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 2.9e-203 711.8 414 82.9
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 1.4e-202 709.5 392 86.0
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 1.4e-202 709.5 406 84.2
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 5.5e-202 707.6 392 84.2
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 5.5e-202 707.6 421 82.4
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 4.6e-201 704.5 404 80.9
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 2.6e-199 698.7 380 86.6
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 2.6e-199 698.7 366 89.6
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 4.4e-199 698.0 400 83.2
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 1.7e-198 696.0 415 79.5
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 1.6e-193 679.5 386 81.9
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 3.6e-193 678.3 386 81.6
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 1.0e-192 676.8 386 83.4
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 3.0e-192 675.2 386 81.1
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 3.9e-192 674.9 404 81.9
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 1.5e-191 672.9 404 82.2
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 1.5e-191 672.9 411 82.0
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 3.3e-191 671.8 404 79.7
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 5.7e-191 671.0 356 87.6
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 4.1e-189 664.8 374 82.4
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 1.5e-186 656.4 403 80.1
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 4.0e-184 648.3 399 78.2
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 1.4e-181 639.8 346 86.4
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 1.0e-179 633.6 355 82.8
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 6.8e-176 620.9 329 87.5
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 1.2e-169 600.1 394 71.6
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 2.8e-169 599.0 392 75.3
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 2.3e-168 595.9 399 71.2
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 3.4e-167 592.0 396 70.2
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 2.8e-166 589.0 395 70.9
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 8.3e-166 587.4 306 91.5
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 1.9e-162 576.2 307 90.6
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.1e-157 560.5 307 87.9
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 1.2e-153 547.0 346 76.3
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 1.3e-150 537.0 402 65.7
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 3.6e-145 518.8 394 63.5
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 1.4e-125 453.8 243 90.1
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 4.2e-109 399.1 266 69.2
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 8.4e-102 374.8 209 86.6
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 8.2e-97 358.2 187 88.2
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 1.8e-88 330.5 171 89.5
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 5.3e-88 328.9 218 77.5
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 1.0e-86 324.7 372 52.4
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 8.8e-83 311.6 224 66.5
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 8.8e-83 311.6 159 89.3
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 1.4e-77 294.3 438 40.2
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 2.2e-73 280.4 146 89.0
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 3.8e-62 243.0 145 80.7
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 1.4e-59 234.6 173 65.3
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 1.0e-46 191.8 189 56.1
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 4.6e-31 139.8 72 88.9
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 8.3e-25 119.0 201 41.3
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 1.2e-15 88.6 275 27.6
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 3.5e-07 60.5 51 58.8


User provided reference genes

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