Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 0.0e+00 1205.3 731 100.0
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.2e-223 780.4 754 74.3
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 3.4e-93 347.1 685 50.8
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 4.6e-74 283.5 868 37.9
Cfa013242 Carpinus fangiana HOM05D063909 ORTHO05D004564 5.7e-72 276.6 627 48.3
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 7.2e-67 259.6 796 38.8
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 7.4e-64 249.6 290 53.1
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 2.4e-62 244.6 218 65.1
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 4.1e-62 243.8 915 36.1
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 9.1e-62 242.7 222 61.3
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 2.0e-61 241.5 211 64.0
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 1.0e-60 239.2 238 55.9
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 3.2e-59 234.2 228 58.8
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 7.2e-59 233.0 203 64.0
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 9.4e-59 232.6 830 34.8
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 2.7e-58 231.1 240 56.7
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 3.6e-58 230.7 287 50.5
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 1.0e-57 229.2 207 62.3
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.0e-57 227.6 259 54.4
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 5.1e-57 226.9 229 56.8
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 4.8e-55 220.3 161 70.8
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 6.3e-55 219.9 203 58.6
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.4e-54 218.8 213 59.2
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 2.4e-54 218.0 206 58.3
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 5.3e-54 216.9 266 50.8
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 5.3e-54 216.9 305 46.2
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 9.1e-54 216.1 211 60.7
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 1.2e-53 215.7 313 46.0
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 2.0e-53 214.9 211 55.9
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 8.5e-52 209.5 246 57.3
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 8.5e-52 209.5 198 60.1
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.1e-51 209.1 212 58.5
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 1.4e-51 208.8 203 56.7
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.9e-51 208.4 238 57.6
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.2e-51 207.6 211 58.3
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 3.6e-50 204.1 203 58.1
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.2e-47 194.9 207 55.6
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 2.8e-47 194.5 254 49.6
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.7e-47 194.1 207 55.1
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 4.8e-47 193.7 283 48.1
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 8.2e-47 193.0 267 47.2
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 8.2e-47 193.0 267 47.2
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 8.2e-47 193.0 197 55.8
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 1.4e-46 192.2 208 52.9
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 1.4e-46 192.2 269 46.1
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 4.1e-46 190.7 164 62.8
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 7.0e-46 189.9 696 36.8
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 1.6e-45 188.7 933 33.0
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.6e-45 188.7 239 46.4
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 1.6e-45 188.7 190 58.9
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 1.6e-45 188.7 806 37.0
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 1.6e-45 188.7 615 33.5
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.0e-44 186.0 152 64.5
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 2.2e-44 184.9 246 48.8
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 2.2e-44 184.9 254 48.8
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 5.0e-44 183.7 316 44.6
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 6.5e-44 183.3 202 53.0
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 1.1e-43 182.6 240 52.1
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 1.9e-43 181.8 203 51.7
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 2.5e-43 181.4 300 45.3
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 3.2e-43 181.0 209 51.7
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.2e-43 181.0 281 49.1
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 7.2e-43 179.9 206 53.4
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 1.2e-42 179.1 218 52.3
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 1.6e-42 178.7 803 32.9
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 4.7e-42 177.2 221 51.1
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 6.1e-42 176.8 264 47.0
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 8.0e-42 176.4 208 52.4
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 8.0e-42 176.4 234 47.0
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 1.0e-41 176.0 219 52.1
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 1.0e-41 176.0 219 52.1
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 1.4e-41 175.6 207 51.7
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 1.4e-41 175.6 147 66.0
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 1.4e-41 175.6 146 63.0
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 3.0e-41 174.5 785 33.4
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 4.0e-41 174.1 210 51.4
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 4.0e-41 174.1 860 34.5
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 6.7e-41 173.3 158 62.0
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.5e-40 172.2 206 52.4
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.5e-40 172.2 152 61.8
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 1.5e-40 172.2 146 62.3
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.0e-40 171.8 152 61.2
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 2.6e-40 171.4 157 60.5
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 4.4e-40 170.6 127 66.1
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 7.5e-40 169.9 208 51.0
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 7.5e-40 169.9 755 33.2
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.7e-39 168.7 279 41.9
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 4.8e-39 167.2 146 61.6
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 8.2e-39 166.4 998 30.7
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 4.1e-38 164.1 120 70.8
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 9.1e-38 162.9 145 59.3
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 2.0e-37 161.8 118 66.1
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 3.5e-37 161.0 102 75.5
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 5.9e-37 160.2 218 49.1
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 1.0e-36 159.5 102 74.5
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 1.3e-36 159.1 102 74.5
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 2.2e-36 158.3 148 58.1
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 3.8e-36 157.5 186 51.6
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 8.5e-36 156.4 184 51.6
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.1e-35 156.0 103 73.8
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 1.1e-35 156.0 912 31.6
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 3.2e-35 154.5 108 68.5
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 4.2e-35 154.1 132 62.9
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 5.5e-35 153.7 119 65.5
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 9.4e-35 152.9 191 44.5
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 9.4e-35 152.9 111 72.1
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 6.1e-34 150.2 144 52.8
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 7.5e-32 143.3 675 33.0
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 2.8e-31 141.4 725 34.5
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.8e-31 141.4 200 42.5
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 1.1e-30 139.4 809 30.7
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 1.8e-30 138.7 90 72.2
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.4e-30 138.3 132 58.3
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 9.1e-30 136.3 212 43.4
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 5.9e-29 133.7 187 46.0
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 5.9e-29 133.7 260 36.9
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 2.3e-28 131.7 89 70.8
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.0e-28 130.6 944 32.3
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 1.5e-27 129.0 161 47.8
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 1.9e-27 128.6 95 67.4
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 9.5e-27 126.3 824 31.4
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 6.1e-26 123.6 80 71.2
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.4e-25 122.5 145 51.0
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.4e-25 122.5 145 51.0
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.5e-24 119.0 106 57.5
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 7.5e-24 116.7 227 38.8
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.7e-23 115.5 108 54.6
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.2e-23 115.2 104 60.6
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 8.3e-23 113.2 104 59.6
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.8e-22 112.1 117 49.6
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 9.2e-22 109.8 692 29.0
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 3.5e-21 107.8 102 52.9
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 6.6e-20 103.6 106 52.8
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 6.6e-20 103.6 108 50.9
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 8.6e-20 103.2 114 50.9
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.1e-19 102.8 105 52.4
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 1.1e-19 102.8 106 52.8
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.5e-19 102.4 151 45.0
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 2.5e-19 101.7 100 55.0
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 2.5e-19 101.7 110 51.8
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 4.3e-19 100.9 105 52.4
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 9.5e-19 99.8 766 28.7
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 1.2e-18 99.4 140 45.0
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 2.1e-18 98.6 163 41.7
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 3.6e-18 97.8 102 51.0
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 8.0e-18 96.7 100 53.0
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.0e-17 96.3 167 38.3
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 6.8e-17 93.6 183 39.3
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 8.9e-17 93.2 737 29.9
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 2.0e-16 92.0 103 44.7
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 5.4e-14 84.0 108 45.4
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 1.6e-13 82.4 82 56.1
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.6e-13 82.4 52 69.2
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 2.0e-13 82.0 108 45.4
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 3.5e-13 81.3 98 41.8
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 4.6e-13 80.9 65 72.3
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 1.3e-12 79.3 186 36.6
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 8.6e-12 76.6 49 77.6
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 5.6e-11 73.9 144 36.8
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.2e-10 72.8 67 52.2
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.3e-07 62.8 65 50.8
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 9.2e-06 56.6 64 43.8


User provided reference genes

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