Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.1e-101 373.2 182 100.0
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.8e-72 276.2 167 79.6
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 4.5e-71 271.6 167 78.4
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.1e-69 266.9 176 73.3
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 6.1e-68 261.2 165 73.9
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 1.8e-67 259.6 165 76.4
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 2.3e-67 259.2 166 75.3
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 2.3e-67 259.2 166 75.3
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 6.8e-67 257.7 167 73.1
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 8.8e-67 257.3 166 74.7
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 8.8e-67 257.3 164 76.8
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.5e-66 256.5 166 75.3
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 2.0e-66 256.1 166 75.3
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.4e-66 255.4 165 73.9
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 9.8e-66 253.8 164 75.6
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.3e-65 253.4 160 76.9
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 3.7e-65 251.9 163 73.0
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.7e-65 251.9 164 73.2
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 6.3e-65 251.1 164 74.4
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 6.3e-65 251.1 167 70.1
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 8.3e-65 250.8 164 71.3
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 8.3e-65 250.8 162 74.1
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.8e-64 249.6 164 73.2
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 2.4e-64 249.2 163 72.4
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 5.4e-64 248.1 167 72.5
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.4e-64 248.1 164 70.7
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 5.4e-64 248.1 165 72.7
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.2e-63 246.9 160 73.1
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.2e-63 246.9 164 70.7
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.0e-63 246.1 160 73.1
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 2.0e-63 246.1 160 72.5
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 4.5e-63 245.0 160 71.9
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 4.5e-63 245.0 164 70.1
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 4.5e-63 245.0 164 71.3
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 4.5e-63 245.0 162 72.2
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.9e-63 244.6 164 71.3
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.9e-63 244.6 164 71.3
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 5.9e-63 244.6 160 72.5
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 7.7e-63 244.2 168 71.4
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 7.7e-63 244.2 164 71.3
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 7.7e-63 244.2 164 71.3
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.0e-62 243.8 160 72.5
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.0e-62 243.8 165 72.7
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.7e-62 243.0 164 70.7
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.7e-62 243.0 160 71.2
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 2.3e-62 242.7 164 70.7
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 2.3e-62 242.7 164 70.7
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.3e-62 242.7 160 71.9
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.3e-62 242.7 164 70.7
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 3.8e-62 241.9 167 70.7
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 5.0e-62 241.5 164 70.1
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 5.0e-62 241.5 164 70.1
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 5.0e-62 241.5 164 70.1
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 6.6e-62 241.1 160 72.5
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 6.6e-62 241.1 167 69.5
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 6.6e-62 241.1 164 70.1
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 6.6e-62 241.1 164 70.1
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 8.6e-62 240.7 160 71.9
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 8.6e-62 240.7 164 71.3
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 8.6e-62 240.7 164 70.7
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 8.6e-62 240.7 164 71.3
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 1.5e-61 240.0 160 71.2
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.5e-61 240.0 167 70.1
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 1.5e-61 240.0 160 72.5
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.5e-61 240.0 160 71.9
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.5e-61 240.0 164 71.3
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 1.9e-61 239.6 160 71.9
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.9e-61 239.6 160 71.2
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.9e-61 239.6 160 71.9
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 2.5e-61 239.2 164 70.1
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.5e-61 239.2 160 70.6
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 3.3e-61 238.8 160 70.6
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 5.6e-61 238.0 160 70.6
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 5.6e-61 238.0 164 69.5
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.6e-61 238.0 168 71.4
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 7.3e-61 237.7 160 69.4
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.2e-60 236.9 160 70.0
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.2e-60 236.9 160 70.0
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 1.2e-60 236.9 164 67.7
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.6e-60 236.5 160 71.2
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 2.1e-60 236.1 167 68.3
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 2.1e-60 236.1 160 70.0
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 4.7e-60 235.0 168 70.8
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.7e-60 235.0 168 70.8
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 4.7e-60 235.0 160 69.4
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 6.1e-60 234.6 162 71.6
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 6.1e-60 234.6 160 69.4
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 1.0e-59 233.8 160 68.8
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.4e-59 233.4 164 68.9
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 1.4e-59 233.4 160 69.4
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 2.3e-59 232.6 160 68.1
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.0e-59 232.3 159 67.9
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 4.0e-59 231.9 160 67.5
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 4.0e-59 231.9 160 68.1
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 5.2e-59 231.5 159 69.2
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 6.8e-59 231.1 163 68.1
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 6.8e-59 231.1 160 69.4
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 8.9e-59 230.7 163 67.5
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.9e-59 230.7 168 69.6
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.2e-58 230.3 163 67.5
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 1.2e-58 230.3 169 66.3
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 1.2e-58 230.3 151 74.8
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 4.4e-58 228.4 163 67.5
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 5.7e-58 228.0 162 68.5
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 9.8e-58 227.3 163 66.3
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 9.8e-58 227.3 160 66.2
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 9.8e-58 227.3 162 68.5
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 1.3e-57 226.9 167 66.5
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.3e-57 226.9 160 65.0
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 1.7e-57 226.5 161 69.6
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 1.7e-57 226.5 162 67.3
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 4.9e-57 224.9 160 65.6
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.9e-57 224.9 182 65.9
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 6.4e-57 224.6 163 65.6
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 6.4e-57 224.6 159 65.4
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 8.3e-57 224.2 165 66.1
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.1e-56 223.8 163 66.3
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 2.4e-56 222.6 165 66.1
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 2.4e-56 222.6 159 67.3
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 7.0e-56 221.1 162 64.8
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 1.6e-55 219.9 162 66.0
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.6e-55 219.9 164 61.0
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.0e-54 217.2 162 67.9
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 1.7e-54 216.5 166 61.4
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 2.3e-54 216.1 163 62.0
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 3.9e-54 215.3 164 65.9
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 5.0e-54 214.9 163 62.6
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 6.6e-54 214.5 160 65.0
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.5e-53 213.4 163 64.4
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.9e-53 213.0 162 64.8
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 4.3e-53 211.8 160 65.0
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 5.6e-53 211.5 163 62.6
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 7.3e-53 211.1 163 62.0
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.1e-52 209.5 161 63.4
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 6.2e-52 208.0 166 60.2
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 1.4e-51 206.8 158 60.8
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.4e-51 206.8 163 62.6
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.5e-50 203.4 166 63.9
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 5.8e-50 201.4 132 70.5
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 2.2e-49 199.5 160 61.9
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.2e-48 195.7 156 59.0
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 5.4e-48 194.9 174 52.9
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 7.0e-48 194.5 159 55.3
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 4.6e-47 191.8 132 66.7
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.0e-46 190.7 132 68.9
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 3.9e-46 188.7 164 57.9
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.1e-45 187.2 165 57.6
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.6e-44 182.2 166 53.0
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.6e-44 182.2 166 56.6
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.6e-44 182.2 119 75.6
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.3e-43 179.5 132 68.2
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 1.3e-41 173.7 157 49.7
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 8.3e-41 171.0 131 65.6
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.9e-40 169.9 119 70.6
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 4.6e-39 165.2 160 53.8
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 8.6e-38 161.0 160 55.6
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.1e-37 160.6 119 66.4
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.1e-37 160.6 125 64.0
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 3.1e-35 152.5 153 53.6
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.0e-35 152.1 173 49.1
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.0e-34 149.8 162 50.0
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 4.4e-34 148.7 162 48.1
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 5.4e-32 141.7 95 68.4
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.6e-31 138.7 99 69.7
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 6.0e-31 138.3 102 66.7
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 6.6e-30 134.8 89 73.0
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 6.6e-30 134.8 94 67.0
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.1e-28 129.8 150 44.0
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.3e-25 120.6 91 59.3
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 5.1e-22 108.6 163 41.7
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 1.1e-21 107.5 74 67.6
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 9.3e-16 87.8 83 53.0
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.8e-12 76.3 42 85.7
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.1e-11 74.3 107 41.1
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 3.1e-11 72.8 59 55.9
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 4.0e-11 72.4 182 31.9
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 4.5e-10 68.9 178 30.3
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 4.6e-07 58.9 34 73.5
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.0e-06 57.8 34 70.6
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 1.0e-06 57.8 40 65.0
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 1.3e-06 57.4 32 81.2
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 1.8e-06 57.0 183 25.1
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 5.1e-06 55.5 48 47.9


User provided reference genes

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