Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 6.0e-137 491.1 302 100.0
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 2.6e-116 422.5 302 85.1
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 4.4e-111 405.2 311 82.3
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 5.7e-111 404.8 300 83.3
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 7.0e-109 397.9 314 76.8
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 2.2e-107 392.9 304 72.7
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 3.2e-106 389.0 304 76.6
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 1.6e-105 386.7 299 78.9
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 6.1e-105 384.8 306 77.1
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 8.0e-105 384.4 304 80.9
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 1.1e-103 380.6 302 82.1
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 2.0e-103 379.8 304 76.0
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 7.4e-103 377.9 300 79.3
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 7.4e-103 377.9 300 77.7
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 1.3e-102 377.1 306 80.7
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 8.2e-102 374.4 302 80.1
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 4.1e-101 372.1 302 75.2
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 5.3e-101 371.7 302 75.2
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 9.1e-101 370.9 304 70.7
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 1.2e-100 370.5 303 79.9
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 2.0e-100 369.8 304 74.7
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.7e-99 366.7 304 78.9
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 2.2e-99 366.3 316 75.3
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 1.1e-98 364.0 303 75.9
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 1.1e-98 364.0 298 76.5
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 4.2e-98 362.1 315 66.0
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 7.2e-98 361.3 300 65.7
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 1.2e-97 360.5 300 71.3
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.6e-97 360.1 274 80.7
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 2.1e-97 359.8 340 72.1
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 2.7e-97 359.4 308 70.8
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 2.7e-97 359.4 250 88.4
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 2.7e-97 359.4 304 66.4
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 8.0e-97 357.8 308 67.9
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.0e-96 357.5 279 83.9
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 3.0e-96 355.9 302 71.2
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 4.0e-96 355.5 305 68.5
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 5.2e-96 355.1 306 69.0
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 6.8e-96 354.8 305 74.8
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.5e-95 353.6 305 74.4
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 2.6e-95 352.8 302 69.2
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 4.4e-95 352.1 305 69.8
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 4.4e-95 352.1 301 69.4
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 5.7e-95 351.7 303 73.9
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 1.3e-94 350.5 301 76.7
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 1.7e-94 350.1 301 65.4
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.8e-94 349.4 305 70.2
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 8.3e-94 347.8 300 63.7
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 1.8e-93 346.7 302 64.9
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 9.1e-93 344.4 301 63.5
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 1.0e-91 340.9 300 69.3
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 2.2e-91 339.7 301 68.1
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 2.5e-90 336.3 271 67.2
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 5.5e-90 335.1 305 75.7
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.7e-86 323.6 305 61.0
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 2.2e-86 323.2 305 61.0
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 3.7e-86 322.4 319 70.8
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 1.8e-85 320.1 311 66.9
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 2.4e-85 319.7 302 70.9
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 9.1e-85 317.8 302 69.2
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 5.0e-83 312.0 330 65.5
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 5.0e-83 312.0 300 64.0
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 1.9e-82 310.1 304 56.6
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 3.3e-82 309.3 343 65.3
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 7.2e-82 308.1 195 81.0
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.6e-81 307.0 171 88.9
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 1.6e-81 307.0 295 65.4
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 2.8e-81 306.2 300 62.0
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 1.4e-80 303.9 307 67.1
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 3.0e-80 302.8 303 67.0
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 5.2e-80 302.0 300 72.0
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 6.8e-80 301.6 303 67.0
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 1.2e-79 300.8 296 70.3
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 2.0e-79 300.1 300 71.7
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 1.7e-78 297.0 342 63.2
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 2.9e-78 296.2 309 68.0
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 8.3e-78 294.7 294 64.6
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 2.0e-76 290.0 300 66.3
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.7e-75 287.0 302 66.6
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 2.3e-75 286.6 305 60.7
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.6e-73 280.4 277 69.7
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 2.1e-73 280.0 299 63.9
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.8e-72 276.9 305 63.3
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 1.8e-72 276.9 302 62.6
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 2.3e-72 276.6 274 72.6
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 1.5e-71 273.9 300 55.0
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 5.8e-71 271.9 309 61.2
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 9.8e-71 271.2 311 60.8
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 9.8e-71 271.2 305 64.9
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 9.8e-71 271.2 305 64.9
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.7e-70 269.2 189 71.4
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 2.4e-69 266.5 300 68.3
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 3.2e-69 266.2 331 55.6
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 1.7e-67 260.4 302 64.6
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 1.5e-66 257.3 304 64.8
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 4.0e-64 249.2 302 50.0
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 4.0e-64 249.2 302 50.0
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 5.2e-64 248.8 304 56.2
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 1.3e-62 244.2 307 59.6
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 2.2e-62 243.4 361 54.3
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 1.4e-61 240.7 302 52.0
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 1.4e-61 240.7 302 52.0
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 1.4e-61 240.7 302 52.0
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 2.4e-61 240.0 303 58.1
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 7.1e-61 238.4 307 61.9
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.0e-59 234.6 294 63.3
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.1e-58 231.1 189 66.1
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 2.5e-58 229.9 274 64.2
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 4.0e-56 222.6 302 52.0
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 1.2e-55 221.1 180 64.4
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 7.6e-47 191.8 120 76.7
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 6.4e-46 188.7 158 64.6
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.0e-43 181.4 116 74.1
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 3.0e-43 179.9 137 67.2
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 6.2e-41 172.2 186 54.8
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 7.1e-37 158.7 164 80.5
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 2.3e-35 153.7 226 45.6
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 2.0e-31 140.6 105 68.6
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 7.4e-26 122.1 66 89.4
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 2.1e-25 120.6 136 50.7
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 3.8e-22 109.8 98 60.2
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 9.3e-21 105.1 95 60.0
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 9.3e-21 105.1 95 60.0
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 1.3e-17 94.7 129 57.4
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 1.1e-16 91.7 60 76.7
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 4.1e-16 89.7 48 85.4
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 5.0e-14 82.8 55 70.9
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 2.5e-13 80.5 55 69.1
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 5.1e-11 72.8 57 66.7
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 2.8e-09 67.0 64 57.8
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.1e-08 65.1 61 54.1
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 5.3e-08 62.8 101 41.6
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 6.9e-08 62.4 66 57.6
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 4.5e-07 59.7 29 89.7
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 7.7e-07 58.9 105 39.0
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.7e-06 57.8 124 34.7
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 2.9e-06 57.0 85 34.1
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 3.8e-06 56.6 105 38.1
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 3.8e-06 56.6 60 48.3
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 5.0e-06 56.2 101 35.6
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 5.0e-06 56.2 114 36.0
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 5.0e-06 56.2 96 39.6
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 5.0e-06 56.2 42 59.5
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 6.5e-06 55.8 56 48.2
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 6.5e-06 55.8 107 36.4
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 6.5e-06 55.8 96 38.5
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 8.5e-06 55.5 56 48.2
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 8.5e-06 55.5 53 49.1
PGSC0003DMG400014409 Solanum tuberosum HOM05D002899 ORTHO05D003850 8.5e-06 55.5 42 57.1


User provided reference genes

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