Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 3.4e-100 368.2 173 100.0
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 3.5e-65 251.9 159 75.5
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 1.1e-61 240.4 160 74.4
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 1.3e-51 206.8 155 61.9
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 3.8e-51 205.3 165 58.2
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 4.6e-49 198.4 167 58.7
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.9e-48 195.3 166 58.4
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 5.1e-48 194.9 161 57.1
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 1.9e-47 193.0 165 55.8
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 7.4e-47 191.0 164 56.7
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.4e-45 186.8 177 52.5
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 3.1e-45 185.7 168 54.2
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 4.1e-45 185.3 155 57.4
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 4.1e-45 185.3 143 60.1
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 5.9e-44 181.4 145 58.6
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 1.0e-43 180.6 163 50.3
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 2.2e-43 179.5 154 55.2
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 2.2e-43 179.5 161 54.0
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 2.9e-43 179.1 154 56.5
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 8.5e-43 177.6 154 54.5
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 3.2e-42 175.6 159 56.6
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.1e-41 172.9 158 56.3
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 2.1e-41 172.9 158 56.3
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.8e-40 169.9 158 55.7
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.3e-39 165.2 159 52.2
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 9.7e-39 164.1 154 51.9
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.3e-38 163.7 141 55.3
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 1.1e-37 160.6 155 50.3
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 3.1e-37 159.1 133 57.1
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 6.9e-37 157.9 126 59.5
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.0e-35 154.1 127 56.7
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 1.7e-35 153.3 178 45.5
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 3.2e-34 149.1 156 47.4
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 9.4e-34 147.5 161 47.2
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 2.1e-33 146.4 157 42.7
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 3.6e-33 145.6 112 61.6
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 1.0e-32 144.1 165 46.7
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 3.0e-32 142.5 167 42.5
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 3.9e-32 142.1 165 44.2
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 3.9e-32 142.1 164 43.3
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 5.1e-32 141.7 160 41.9
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 6.7e-32 141.4 153 48.4
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.1e-31 140.6 152 44.7
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 1.1e-31 140.6 140 49.3
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.1e-31 140.6 147 47.6
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.5e-31 140.2 164 42.7
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 3.3e-31 139.0 124 50.8
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 3.3e-31 139.0 147 43.5
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 7.4e-31 137.9 148 46.6
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 7.4e-31 137.9 123 50.4
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 9.7e-31 137.5 124 49.2
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 1.3e-30 137.1 149 43.6
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 1.7e-30 136.7 119 55.5
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 1.7e-30 136.7 133 43.6
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.2e-30 136.3 149 46.3
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 2.2e-30 136.3 124 47.6
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 3.7e-30 135.6 115 51.3
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 4.8e-30 135.2 113 54.0
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 4.8e-30 135.2 192 38.0
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 4.8e-30 135.2 173 39.3
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 6.3e-30 134.8 132 47.7
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 8.2e-30 134.4 132 47.0
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 8.2e-30 134.4 132 47.0
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 8.2e-30 134.4 170 39.4
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 1.1e-29 134.0 132 46.2
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 1.4e-29 133.7 124 50.0
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 1.4e-29 133.7 135 50.4
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.8e-29 133.3 118 53.4
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.8e-29 133.3 128 47.7
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.8e-29 133.3 120 49.2
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 1.8e-29 133.3 108 51.9
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 1.8e-29 133.3 130 46.9
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 2.4e-29 132.9 116 49.1
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 2.4e-29 132.9 152 42.8
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 3.1e-29 132.5 131 48.1
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 3.1e-29 132.5 130 46.2
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 4.1e-29 132.1 169 40.2
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 4.1e-29 132.1 125 48.8
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 1.5e-28 130.2 126 44.4
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.5e-28 130.2 104 55.8
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 2.0e-28 129.8 131 46.6
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 2.0e-28 129.8 108 50.9
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 2.0e-28 129.8 123 44.7
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 2.6e-28 129.4 114 50.9
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 3.5e-28 129.0 111 48.6
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 3.5e-28 129.0 167 41.9
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 4.5e-28 128.6 121 46.3
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 7.7e-28 127.9 119 49.6
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 7.7e-28 127.9 165 38.8
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.0e-27 127.5 122 48.4
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 1.3e-27 127.1 113 50.4
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 1.3e-27 127.1 113 50.4
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 1.3e-27 127.1 113 50.4
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.3e-27 127.1 178 36.5
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 2.2e-27 126.3 202 37.1
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 2.9e-27 125.9 115 46.1
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 3.8e-27 125.6 111 48.6
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 6.5e-27 124.8 99 56.6
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 6.5e-27 124.8 132 48.5
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 6.5e-27 124.8 99 55.6
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 1.1e-26 124.0 110 49.1
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 1.1e-26 124.0 89 60.7
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 1.5e-26 123.6 119 49.6
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 1.9e-26 123.2 99 54.5
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 1.9e-26 123.2 160 38.8
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 2.5e-26 122.9 99 55.6
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 3.2e-26 122.5 119 47.9
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 7.2e-26 121.3 121 47.1
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 7.2e-26 121.3 114 50.0
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 9.4e-26 120.9 92 56.5
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.2e-25 120.6 99 54.5
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 1.2e-25 120.6 128 42.2
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 1.6e-25 120.2 133 39.1
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 2.1e-25 119.8 99 53.5
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 2.1e-25 119.8 128 42.2
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 2.7e-25 119.4 128 42.2
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 4.7e-25 118.6 99 50.5
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.4e-24 117.1 121 43.8
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 1.4e-24 117.1 137 38.7
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 2.3e-24 116.3 126 42.9
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 3.0e-24 115.9 116 44.0
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 6.7e-24 114.8 66 78.8
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 8.8e-24 114.4 107 47.7
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 1.5e-23 113.6 116 42.2
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 5.7e-23 111.7 132 43.2
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 5.7e-23 111.7 104 47.1
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 7.5e-23 111.3 117 41.9
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 9.7e-23 110.9 117 42.7
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 1.3e-22 110.5 102 49.0
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 1.3e-22 110.5 127 41.7
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 1.3e-22 110.5 108 47.2
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 1.3e-22 110.5 98 50.0
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.3e-22 110.5 107 46.7
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 1.7e-22 110.2 117 42.7
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 1.7e-22 110.2 117 42.7
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 1.7e-22 110.2 117 42.7
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 1.7e-22 110.2 134 39.6
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 2.8e-22 109.4 102 46.1
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 2.8e-22 109.4 110 43.6
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 2.8e-22 109.4 110 43.6
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 3.7e-22 109.0 99 47.5
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 4.8e-22 108.6 107 46.7
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 6.3e-22 108.2 180 33.3
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.1e-21 107.5 132 42.4
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.4e-21 107.1 108 42.6
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 1.4e-21 107.1 109 45.9
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.4e-21 107.1 136 41.2
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 1.8e-21 106.7 175 33.7
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 2.4e-21 106.3 109 43.1
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 4.1e-21 105.5 114 44.7
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 5.3e-21 105.1 123 39.0
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 5.3e-21 105.1 117 43.6
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 7.0e-21 104.8 108 42.6
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 9.1e-21 104.4 102 46.1
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.6e-20 103.6 102 47.1
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 5.9e-20 101.7 120 38.3
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 5.9e-20 101.7 128 42.2
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 7.7e-20 101.3 87 49.4
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 2.9e-19 99.4 150 34.7
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 5.0e-19 98.6 114 42.1
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 5.0e-19 98.6 101 45.5
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 8.5e-19 97.8 130 36.9
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 1.9e-18 96.7 94 45.7
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.9e-18 96.7 128 37.5
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 4.2e-18 95.5 112 39.3
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 4.7e-17 92.0 121 37.2
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 6.1e-17 91.7 134 34.3
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 8.0e-17 91.3 118 39.0
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 1.0e-16 90.9 93 47.3
Sabra05G0012900 Salix brachista HOM05D002444 ORTHO05D004748 4.0e-16 89.0 142 39.4
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 8.8e-16 87.8 124 33.1
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 2.0e-15 86.7 111 42.3
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 4.4e-15 85.5 113 39.8
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 2.2e-14 83.2 97 42.3
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 5.0e-11 72.0 58 53.4
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 3.2e-10 69.3 78 41.0
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 4.2e-10 68.9 72 50.0
CANSAT54G2708 Cannabis sativa HOM05D002444 ORTHO05D004748 1.0e-08 64.3 77 42.9
HPP92_002049 Vanilla planifolia HOM05D040614 ORTHO05D036980 1.0e-08 64.3 107 30.8
SMO361G0424 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 2.3e-08 63.2 102 38.2
SMO361G0689 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 2.3e-08 63.2 102 38.2
Cpa.g.sc2.284 Carica papaya HOM05D008739 ORTHO05D010871 4.0e-08 62.4 75 44.0


User provided reference genes

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