Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 6.0e-258 893.6 452 100.0
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 1.1e-206 723.4 454 81.7
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 1.2e-200 703.4 450 76.2
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 2.0e-197 692.6 454 78.4
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 1.5e-195 686.4 450 76.9
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 1.8e-193 679.5 450 76.2
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 5.4e-190 667.9 449 75.3
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 1.1e-185 653.7 454 73.8
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 3.1e-185 652.1 452 73.7
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 4.4e-184 648.3 450 72.9
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 7.5e-184 647.5 451 72.7
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 6.4e-183 644.4 458 72.7
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 1.4e-182 643.3 450 72.9
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 2.4e-182 642.5 453 73.1
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 5.4e-182 641.3 450 71.8
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 5.4e-182 641.3 450 72.9
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.3e-180 636.7 450 72.2
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 3.0e-180 635.6 427 75.6
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 7.3e-179 630.9 450 70.7
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 2.1e-178 629.4 450 72.4
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 8.1e-178 627.5 450 69.8
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 5.8e-176 621.3 450 70.7
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 7.6e-176 620.9 450 69.3
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 6.4e-175 617.8 490 66.5
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 1.1e-174 617.1 450 69.6
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.6e-173 613.2 451 70.1
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 2.1e-173 612.8 452 69.2
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 4.6e-173 611.7 450 69.1
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 1.7e-172 609.8 451 69.8
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 1.7e-172 609.8 448 69.4
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 5.1e-172 608.2 454 68.5
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 8.7e-172 607.4 474 65.8
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 1.1e-171 607.1 452 69.5
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 1.5e-171 606.7 436 70.2
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 3.3e-171 605.5 436 70.0
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 1.2e-170 603.6 451 68.1
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 1.2e-168 597.0 470 66.4
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.2e-168 597.0 452 68.8
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 1.5e-168 596.7 447 68.9
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 9.9e-168 594.0 451 68.3
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 1.7e-167 593.2 450 67.8
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 2.2e-167 592.8 451 69.0
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 3.8e-167 592.0 450 67.3
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 2.4e-166 589.3 451 68.3
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 2.1e-165 586.3 405 73.6
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 4.8e-162 575.1 449 66.1
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 4.5e-160 568.5 451 66.3
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 4.5e-160 568.5 448 66.5
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 1.3e-159 567.0 451 65.2
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 1.7e-159 566.6 459 64.3
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 2.2e-159 566.2 448 65.8
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 3.8e-159 565.5 454 64.8
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 1.9e-158 563.1 450 65.1
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 4.2e-158 562.0 457 65.9
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 5.4e-158 561.6 450 65.3
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 7.1e-158 561.2 448 65.4
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 1.2e-157 560.5 453 65.6
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 2.1e-157 559.7 453 64.0
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 2.1e-157 559.7 354 79.4
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 1.3e-156 557.0 451 64.1
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 8.7e-156 554.3 453 64.2
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 1.5e-155 553.5 451 61.9
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 1.9e-155 553.1 417 70.5
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 5.6e-155 551.6 451 63.9
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 7.4e-155 551.2 448 64.5
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 9.6e-155 550.8 452 63.1
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 2.1e-154 549.7 386 73.3
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 6.2e-154 548.1 390 72.6
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.8e-153 546.6 451 65.0
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 5.3e-153 545.0 340 80.0
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 9.0e-153 544.3 460 63.0
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 9.0e-153 544.3 453 64.2
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 1.5e-152 543.5 477 61.2
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 3.4e-152 542.3 468 61.8
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 4.5e-152 542.0 461 64.4
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 1.2e-149 533.9 408 67.4
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 2.1e-149 533.1 451 62.3
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 2.7e-149 532.7 452 63.5
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 2.3e-148 529.6 452 62.2
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 1.6e-146 523.5 503 57.3
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 1.8e-145 520.0 370 72.7
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 2.4e-145 519.6 475 60.4
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 1.5e-144 516.9 467 61.0
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 3.4e-144 515.8 340 75.0
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 1.0e-143 514.2 469 61.2
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 1.4e-142 510.4 336 76.8
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.9e-142 510.0 450 61.3
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.5e-136 490.3 340 71.2
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 6.1e-133 478.4 411 61.3
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 2.4e-129 466.5 460 55.2
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 6.5e-127 458.4 454 54.4
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 1.1e-126 457.6 255 87.5
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 1.1e-126 457.6 453 54.3
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 1.4e-121 440.7 370 63.0
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 1.2e-120 437.6 316 71.2
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.4e-118 430.6 377 60.7
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 6.1e-117 425.2 363 62.3
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 1.0e-116 424.5 476 50.4
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 5.7e-115 418.7 392 56.4
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 7.7e-112 408.3 255 75.7
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.0e-111 407.9 253 77.1
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 8.8e-108 394.8 464 48.9
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 9.7e-107 391.3 381 54.9
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 5.9e-104 382.1 438 53.0
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 9.4e-102 374.8 408 52.0
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 2.3e-100 370.2 357 58.3
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 5.9e-96 355.5 505 43.0
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 3.8e-95 352.8 514 43.2
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 1.6e-93 347.4 343 53.1
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 8.9e-92 341.7 243 68.7
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 1.4e-89 334.3 356 49.2
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 6.6e-87 325.5 318 57.5
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.1e-86 324.7 452 46.5
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 9.2e-81 305.1 395 44.8
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 4.3e-78 296.2 343 48.1
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.7e-74 284.3 440 44.1
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 2.8e-61 240.4 193 68.9
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 2.7e-56 223.8 294 45.2
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 4.8e-53 213.0 163 63.8
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 2.6e-51 207.2 234 52.6
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 8.7e-47 192.2 298 42.3
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 8.1e-45 185.7 138 76.1
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 3.3e-38 163.7 93 81.7
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 5.8e-35 152.9 198 49.5
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 1.6e-32 144.8 370 31.1
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 1.8e-31 141.4 122 58.2
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 3.5e-24 117.1 134 50.0
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.1e-22 112.1 125 48.0
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 1.5e-22 111.7 60 81.7
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 1.1e-20 105.5 206 33.0
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 5.3e-20 103.2 224 38.8
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 3.0e-15 87.4 73 63.0
PGSC0003DMG401006600 Solanum tuberosum HOM05D032728 ORTHO05D007283 8.8e-07 59.3 52 55.8


User provided reference genes

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