Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 1.2e-192 676.4 347 100.0
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 2.5e-163 578.9 351 84.9
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 6.7e-156 554.3 352 81.8
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 1.2e-141 506.9 349 76.5
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 3.6e-141 505.4 349 75.9
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 3.0e-140 502.3 351 74.4
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 8.8e-140 500.7 351 74.4
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 1.7e-138 496.5 349 73.1
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.8e-138 495.7 348 73.9
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 9.1e-137 490.7 349 73.1
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 9.1e-137 490.7 349 73.1
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.0e-136 489.6 350 74.3
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 3.4e-136 488.8 343 74.1
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 4.5e-136 488.4 357 73.7
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 1.0e-135 487.3 349 73.9
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 2.2e-135 486.1 351 73.8
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 2.9e-135 485.7 354 73.2
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 5.0e-135 485.0 349 73.4
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 5.0e-135 485.0 354 73.4
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 1.1e-134 483.8 350 73.1
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.2e-133 480.3 356 72.5
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.7e-133 479.2 356 72.5
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 3.6e-133 478.8 348 72.1
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 6.1e-133 478.0 352 73.6
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 3.9e-132 475.3 347 72.0
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 3.9e-132 475.3 347 72.0
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 2.0e-131 473.0 329 75.4
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.0e-131 473.0 354 72.0
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 2.0e-131 473.0 349 71.3
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 2.6e-131 472.6 355 71.5
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 3.3e-131 472.2 348 73.0
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.7e-130 468.8 369 69.4
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 3.7e-130 468.8 337 73.3
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 4.8e-130 468.4 347 70.6
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 2.4e-129 466.1 328 73.5
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 2.4e-129 466.1 348 70.7
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 5.3e-129 464.9 342 69.9
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 7.0e-129 464.5 345 70.4
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 1.2e-128 463.8 353 70.3
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 1.2e-128 463.8 297 78.8
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 1.0e-127 460.7 348 70.7
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 5.5e-126 454.9 348 70.7
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 3.6e-125 452.2 301 76.1
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 4.7e-125 451.8 255 86.3
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 8.0e-125 451.1 328 71.0
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 5.2e-124 448.4 350 69.7
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 8.8e-124 447.6 347 68.3
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 1.1e-123 447.2 349 68.8
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 2.6e-123 446.0 347 69.7
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 7.4e-123 444.5 384 64.1
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 7.4e-123 444.5 300 74.3
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 7.4e-123 444.5 265 80.8
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 1.3e-122 443.7 345 68.4
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 2.8e-122 442.6 345 67.5
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 3.7e-122 442.2 355 68.7
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 4.8e-122 441.8 343 66.8
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 6.3e-122 441.4 302 72.5
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 8.2e-122 441.0 346 69.4
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 4.1e-121 438.7 353 66.6
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 5.3e-121 438.3 352 68.2
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 7.0e-121 438.0 351 67.2
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 1.2e-120 437.2 338 70.1
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 1.6e-120 436.8 347 67.4
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 2.0e-120 436.4 350 68.0
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 2.6e-120 436.0 347 67.7
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 2.6e-120 436.0 358 66.5
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 1.0e-119 434.1 350 67.1
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 3.8e-119 432.2 349 66.2
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 1.1e-118 430.6 298 73.5
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 2.5e-118 429.5 348 67.8
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 2.5e-118 429.5 348 67.8
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 2.5e-118 429.5 347 68.3
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 7.2e-118 427.9 347 64.6
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 7.2e-118 427.9 255 83.9
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 9.4e-118 427.6 353 67.1
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 9.4e-118 427.6 353 67.1
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 9.4e-118 427.6 297 74.1
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 8.8e-116 421.0 343 66.5
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 5.7e-115 418.3 353 65.2
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 2.2e-114 416.4 345 66.1
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 4.8e-114 415.2 304 74.0
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 6.3e-114 414.8 349 65.3
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 8.3e-114 414.5 292 70.5
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 4.1e-113 412.1 353 65.4
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 9.1e-113 411.0 344 64.5
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 2.0e-112 409.8 334 66.5
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 8.5e-111 404.4 296 70.3
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 1.1e-110 404.1 353 61.8
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 1.2e-109 400.6 345 63.2
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 4.7e-109 398.7 229 84.3
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 8.0e-109 397.9 356 64.9
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 3.4e-107 392.5 313 66.8
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 1.9e-94 350.1 348 55.5
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 7.3e-94 348.2 304 65.1
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 8.3e-90 334.7 359 57.4
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 1.2e-80 304.3 255 61.6
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 2.5e-78 296.6 320 50.6
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 1.6e-77 293.9 173 80.9
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 1.8e-76 290.4 164 86.0
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 7.6e-75 285.0 369 46.3
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 6.6e-71 271.9 358 45.3
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 8.6e-71 271.6 187 70.6
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.9e-66 256.5 144 84.0
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 4.3e-62 242.7 224 50.9
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 5.6e-54 215.7 126 84.1
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 5.6e-54 215.7 126 84.1
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 7.3e-54 215.3 132 82.6
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 3.6e-53 213.0 185 61.6
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 1.9e-49 200.7 132 75.0
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 1.5e-46 191.0 283 38.2
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 8.7e-39 165.2 363 33.1
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 5.3e-36 156.0 159 60.4
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 3.2e-33 146.7 249 36.1
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 2.5e-30 137.1 107 70.1
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 2.0e-27 127.5 83 75.9
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 6.1e-24 115.9 201 41.3
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 3.7e-21 106.7 93 61.3
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 1.5e-19 101.3 54 85.2
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 1.0e-15 88.6 55 70.9
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 4.4e-14 83.2 129 41.9
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 1.1e-12 78.6 138 44.2
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 1.1e-12 78.6 129 40.3
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 1.1e-09 68.6 38 84.2
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 2.3e-07 60.8 39 71.8
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 2.3e-07 60.8 39 71.8
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 6.7e-07 59.3 253 24.5
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 6.7e-07 59.3 252 25.0
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 8.8e-07 58.9 252 25.0
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 1.1e-06 58.5 254 24.8
HPP92_002889 Vanilla planifolia HOM05D006315 ORTHO05D008052 1.1e-06 58.5 34 76.5
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.5e-06 58.2 253 25.7
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 2.6e-06 57.4 239 25.1
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.6e-06 57.4 254 24.4
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 2.6e-06 57.4 254 25.2
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 3.3e-06 57.0 252 24.6
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 3.3e-06 57.0 252 25.4
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 5.7e-06 56.2 252 24.6
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 7.5e-06 55.8 250 22.8


User provided reference genes

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