Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 0.0e+00 1508.0 803 100.0
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 4.1e-273 944.9 831 63.8
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 1.5e-264 916.4 833 62.5
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 3.5e-200 702.6 854 52.5
CiPaw.08G165600 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.6e-152 544.3 535 62.1
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 4.7e-80 303.5 755 34.4
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.2e-75 288.9 875 32.7
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 1.3e-74 285.4 868 32.6
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 3.3e-73 280.8 866 33.0
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.6e-72 277.3 851 31.7
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.8e-72 276.9 855 32.0
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 1.8e-71 275.0 851 32.0
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.1e-71 274.2 854 32.0
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 7.6e-70 269.6 861 31.8
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 7.6e-70 269.6 858 31.9
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 1.1e-68 265.8 854 29.5
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 5.4e-68 263.5 815 32.3
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 2.1e-67 261.5 846 30.9
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 2.7e-67 261.2 864 30.6
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 6.0e-67 260.0 843 31.3
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 7.9e-67 259.6 865 30.4
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 2.3e-66 258.1 867 32.4
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 5.1e-66 256.9 891 29.9
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 8.7e-66 256.1 829 31.6
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 8.7e-66 256.1 827 31.8
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.5e-65 255.4 826 30.4
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 5.6e-65 253.4 828 31.3
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 1.3e-64 252.3 809 31.9
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 4.8e-64 250.4 865 29.9
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 1.1e-63 249.2 872 31.8
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 2.0e-62 245.0 828 30.4
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 4.5e-62 243.8 820 29.8
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 9.9e-62 242.7 894 29.6
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 8.4e-61 239.6 852 29.9
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 8.4e-61 239.6 863 30.0
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 5.5e-60 236.9 833 31.2
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 1.3e-58 232.3 841 30.4
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 2.3e-58 231.5 859 29.8
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 5.1e-58 230.3 866 29.2
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 6.7e-58 229.9 866 30.3
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 6.7e-58 229.9 864 29.4
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 8.7e-58 229.6 416 39.7
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 1.1e-57 229.2 928 28.3
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 1.9e-57 228.4 815 30.9
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 3.7e-56 224.2 824 30.8
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 3.7e-56 224.2 842 29.5
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 9.0e-55 219.5 862 29.2
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 2.5e-52 211.5 826 29.2
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 3.5e-51 207.6 866 28.4
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 3.3e-49 201.1 836 27.9
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 3.7e-48 197.6 794 28.3
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 6.3e-48 196.8 771 29.6
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 6.9e-47 193.4 850 28.0
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 1.2e-46 192.6 869 28.2
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 1.5e-46 192.2 697 30.3
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 6.5e-45 186.8 212 49.5
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 3.0e-42 177.9 821 27.9
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 4.8e-40 170.6 519 29.5
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 1.4e-39 169.1 888 26.1
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 5.3e-39 167.2 813 26.6
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 6.9e-39 166.8 896 26.6
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 3.4e-38 164.5 842 26.5
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 5.9e-38 163.7 888 25.3
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 1.7e-37 162.2 350 33.7
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 1.7e-37 162.2 303 37.6
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 2.2e-37 161.8 843 26.2
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 8.5e-37 159.8 296 38.2
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.9e-36 158.7 863 25.8
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 2.5e-36 158.3 822 26.2
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 1.2e-35 156.0 838 27.4
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 3.9e-34 151.0 824 26.3
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 8.8e-34 149.8 996 25.1
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 2.0e-33 148.7 855 26.8
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.8e-31 142.1 360 33.1
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 3.1e-31 141.4 628 28.3
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 5.3e-31 140.6 362 31.2
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 5.3e-31 140.6 818 25.8
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 3.5e-30 137.9 828 27.4
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 1.0e-29 136.3 453 28.5
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 3.8e-29 134.4 858 25.6
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 1.1e-28 132.9 885 24.7
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 7.4e-25 120.2 812 25.1
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 4.8e-24 117.5 331 32.3
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 9.1e-23 113.2 292 33.2
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 1.7e-21 109.0 802 24.9
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 1.7e-21 109.0 843 24.8
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 3.8e-21 107.8 975 25.0
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 2.1e-19 102.1 453 28.3
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 1.0e-18 99.8 777 23.8
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.5e-17 95.9 121 48.8
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 1.5e-17 95.9 394 28.7
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 1.3e-16 92.8 395 28.4
Atru.chr2.430 Acer truncatum HOM05D006048 ORTHO05D007642 1.7e-16 92.4 141 44.7
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 4.8e-16 90.9 395 28.4
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 8.2e-16 90.1 533 24.2
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 8.2e-16 90.1 396 28.3
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 1.1e-15 89.7 871 24.2
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 2.4e-15 88.6 395 28.1
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 5.3e-15 87.4 386 28.5
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 5.3e-15 87.4 383 28.2
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 1.0e-13 83.2 394 27.7
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 1.5e-12 79.3 712 22.6
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 8.0e-11 73.6 649 23.6
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 3.4e-09 68.2 96 40.6
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 9.8e-09 66.6 713 23.4
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 9.8e-09 66.6 97 40.2
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 6.3e-08 63.9 205 26.8


User provided reference genes

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