Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.9e-289 998.8 634 100.0
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 1.3e-170 604.0 634 62.0
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 1.0e-162 577.8 601 62.1
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 1.4e-127 461.1 635 52.6
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 2.9e-117 426.8 635 49.4
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 2.0e-89 334.3 635 42.2
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 1.9e-87 327.8 652 44.2
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.5e-84 318.2 233 74.7
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 1.1e-79 302.0 634 38.8
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 5.4e-79 299.7 644 35.7
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.5e-76 291.6 663 36.8
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.9e-76 291.2 631 33.9
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 1.4e-74 285.0 634 37.1
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 1.4e-74 285.0 660 33.2
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 4.0e-74 283.5 635 32.8
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 1.5e-73 281.6 637 42.5
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 3.4e-73 280.4 602 36.9
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.7e-72 278.1 672 39.3
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 3.8e-72 276.9 672 39.0
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 3.8e-72 276.9 602 35.9
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 1.1e-71 275.4 763 32.8
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.9e-71 274.6 635 33.7
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 2.4e-71 274.2 680 39.7
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 4.2e-71 273.5 636 39.2
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 3.5e-70 270.4 674 37.2
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 8.7e-69 265.8 641 33.4
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 4.0e-66 256.9 641 32.9
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 4.0e-66 256.9 636 33.8
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 1.5e-65 255.0 634 34.9
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 4.4e-65 253.4 597 33.8
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 7.6e-65 252.7 648 34.1
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 8.4e-64 249.2 753 36.1
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 4.2e-63 246.9 637 38.8
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 5.4e-63 246.5 643 34.4
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 2.3e-61 241.1 602 31.7
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 3.0e-61 240.7 625 37.3
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 1.9e-60 238.0 635 32.1
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 5.6e-60 236.5 645 35.8
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 1.6e-59 235.0 653 33.8
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 4.0e-58 230.3 641 36.7
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 5.3e-58 229.9 656 33.7
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 7.6e-57 226.1 639 36.2
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 7.6e-57 226.1 664 30.1
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.3e-56 225.3 637 33.1
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 4.9e-56 223.4 635 30.7
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.4e-55 221.9 756 27.2
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 5.5e-55 219.9 646 35.0
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.6e-54 218.4 638 33.9
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 4.6e-54 216.9 901 26.5
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 1.3e-53 215.3 614 38.6
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 3.0e-53 214.2 598 31.3
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 3.9e-53 213.8 681 34.9
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.1e-52 212.2 633 29.7
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 1.1e-52 212.2 660 30.5
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.5e-52 211.8 658 35.6
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 3.3e-52 210.7 639 34.7
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 6.2e-51 206.5 640 31.1
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 9.0e-50 202.6 655 35.6
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 2.0e-49 201.4 604 31.0
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 5.8e-49 199.9 640 35.3
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.3e-48 198.7 641 35.4
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.3e-48 198.7 640 36.7
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.4e-47 195.3 658 35.0
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.9e-47 194.9 641 35.3
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 5.5e-47 193.4 640 33.1
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 7.1e-47 193.0 639 30.4
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 4.6e-46 190.3 601 34.9
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 6.0e-46 189.9 641 32.6
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 7.9e-46 189.5 635 28.3
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 7.9e-46 189.5 638 32.4
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 1.8e-45 188.3 597 29.5
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 3.0e-45 187.6 645 34.1
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 1.1e-44 185.7 634 33.8
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 9.6e-44 182.6 628 29.5
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 2.8e-43 181.0 622 29.3
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 6.3e-43 179.9 640 27.8
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 1.8e-42 178.3 639 33.0
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 2.4e-42 177.9 646 33.7
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 5.3e-42 176.8 635 28.7
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 5.3e-42 176.8 635 28.7
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 2.6e-41 174.5 391 37.9
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 5.5e-39 166.8 643 35.9
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 1.2e-38 165.6 643 27.2
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 2.1e-38 164.9 650 32.9
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 2.1e-38 164.9 674 31.9
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 2.7e-38 164.5 641 32.9
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 1.0e-37 162.5 640 27.0
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 2.3e-37 161.4 206 45.1
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 3.9e-37 160.6 638 33.9
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 6.7e-37 159.8 872 25.0
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 1.9e-36 158.3 597 27.5
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 1.9e-36 158.3 444 32.0
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 4.1e-34 150.6 668 26.6
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 6.9e-34 149.8 764 26.0
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 3.4e-33 147.5 642 29.9
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 1.3e-32 145.6 644 25.6
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 9.4e-31 139.4 641 33.4
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 9.4e-31 139.4 714 29.4
Lsat_1_v5_gn_5_38100 Lactuca sativa HOM05D004923 ORTHO05D005940 1.2e-30 139.0 650 26.8
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 7.9e-30 136.3 702 31.5
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 6.7e-29 133.3 638 28.4
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 6.7e-29 133.3 231 37.7
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 9.7e-28 129.4 625 25.3
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 1.3e-27 129.0 203 43.3
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 1.3e-27 129.0 660 29.2
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 1.1e-23 115.9 767 29.1
QL01p001837 Quercus lobata HOM05D004923 ORTHO05D005940 2.1e-22 111.7 95 68.4
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 5.1e-21 107.1 232 32.8
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 6.7e-21 106.7 630 23.8
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 1.1e-20 105.9 666 26.6
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 3.3e-20 104.4 675 28.1
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 1.7e-19 102.1 170 37.6
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 2.8e-19 101.3 540 23.0
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 8.2e-19 99.8 643 28.8
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 1.1e-18 99.4 229 31.9
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 1.1e-18 99.4 229 31.9
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.6e-17 95.5 217 35.0
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 1.3e-16 92.4 597 29.0
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 5.0e-16 90.5 136 38.2
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 8.5e-16 89.7 613 24.0
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 8.5e-16 89.7 739 24.5
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 1.5e-15 89.0 299 29.1
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 7.2e-15 86.7 615 29.6
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 9.4e-15 86.3 645 25.1
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 6.1e-14 83.6 675 28.1
Haze_23464 Corylus avellana HOM05D004923 ORTHO05D005940 2.6e-12 78.2 86 60.5
CDE09G0746 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 3.3e-12 77.8 666 22.5
Lalb_Chr18g0045421 Lupinus albus HOM05D004923 ORTHO05D005940 5.7e-12 77.0 253 24.5
Peaxi162Scf00351g00530 Petunia axillaris HOM05D004923 ORTHO05D005940 7.5e-12 76.6 277 32.1
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 6.3e-11 73.6 625 21.9
Lsat_1_v5_gn_4_137721 Lactuca sativa HOM05D004923 ORTHO05D005940 2.4e-10 71.6 232 28.0
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 1.0e-08 66.2 133 36.1
CAN.G65.101 Capsicum annuum HOM05D004923 ORTHO05D005940 1.7e-08 65.5 155 32.3
Lj5g0000463 Lotus japonicus HOM05D000160 ORTHO05D000914 6.5e-08 63.5 274 42.3
Glyma.19G085166 Glycine max HOM05D004923 ORTHO05D005940 1.6e-06 58.9 200 28.5
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 2.1e-06 58.5 231 24.2
Peaxi162Scf00413g00516 Petunia axillaris HOM05D004923 ORTHO05D005940 2.7e-06 58.2 257 26.5
SHI18226 Sapria himalayana HOM05D004923 ORTHO05D005940 2.7e-06 58.2 238 26.5


User provided reference genes

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