Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 1.6e-97 359.4 177 100.0
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 3.6e-89 331.6 176 92.6
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 8.8e-88 327.0 167 95.2
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 3.1e-85 318.5 177 89.8
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 9.1e-85 317.0 177 89.3
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 2.0e-84 315.8 177 85.3
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 2.7e-84 315.5 177 87.6
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 3.5e-84 315.1 177 85.9
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 4.5e-84 314.7 177 87.0
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 4.5e-84 314.7 177 87.6
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 5.9e-84 314.3 177 85.9
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 1.0e-83 313.5 177 85.9
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 1.3e-83 313.2 177 85.3
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 2.3e-83 312.4 177 85.9
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 2.9e-83 312.0 161 94.4
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 3.8e-83 311.6 177 84.7
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 3.8e-83 311.6 177 84.7
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 5.0e-83 311.2 178 86.5
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 6.6e-83 310.8 177 83.6
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 8.6e-83 310.5 177 87.0
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 1.5e-82 309.7 177 85.9
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 1.9e-82 309.3 182 86.3
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 1.9e-82 309.3 177 85.9
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 1.9e-82 309.3 177 84.7
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 9.5e-82 307.0 177 83.6
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 9.5e-82 307.0 177 84.2
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 1.2e-81 306.6 177 84.2
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 1.2e-81 306.6 177 85.3
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 1.2e-81 306.6 177 85.3
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 1.2e-81 306.6 177 85.3
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 2.8e-81 305.4 177 84.7
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 3.6e-81 305.1 177 84.7
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 4.7e-81 304.7 177 85.3
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 6.1e-81 304.3 175 82.3
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 8.0e-81 303.9 175 82.3
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 8.0e-81 303.9 178 83.1
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.0e-80 303.5 177 84.7
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.0e-80 303.5 177 85.3
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 1.4e-80 303.1 177 84.7
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.4e-80 303.1 175 81.7
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.4e-80 303.1 177 84.7
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 1.4e-80 303.1 177 85.3
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 2.3e-80 302.4 175 81.7
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 3.0e-80 302.0 177 83.1
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 4.0e-80 301.6 177 84.7
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 6.8e-80 300.8 168 88.1
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 6.8e-80 300.8 177 84.2
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 8.9e-80 300.4 178 80.9
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.5e-79 299.7 177 81.9
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 2.0e-79 299.3 177 83.1
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.6e-79 298.9 177 83.1
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.6e-79 298.9 177 83.1
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 2.6e-79 298.9 177 82.5
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 4.4e-79 298.1 177 83.1
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 4.4e-79 298.1 178 82.6
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 1.7e-78 296.2 177 82.5
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 1.7e-78 296.2 179 81.6
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 1.7e-78 296.2 177 83.6
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 3.7e-78 295.0 177 81.9
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 3.7e-78 295.0 175 82.3
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 6.3e-78 294.3 179 81.0
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 8.3e-78 293.9 166 83.7
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 8.3e-78 293.9 177 81.9
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 8.3e-78 293.9 177 81.9
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 8.3e-78 293.9 177 79.1
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 1.4e-77 293.1 177 81.4
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 1.8e-77 292.7 175 81.1
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 2.4e-77 292.4 177 81.4
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 2.4e-77 292.4 177 80.8
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 7.0e-77 290.8 177 81.4
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 7.0e-77 290.8 175 78.3
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 7.0e-77 290.8 175 81.1
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 7.0e-77 290.8 168 81.5
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 9.2e-77 290.4 177 80.8
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.2e-76 290.0 171 79.5
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 2.0e-76 289.3 181 80.1
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 2.0e-76 289.3 168 83.3
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 2.0e-76 289.3 177 80.8
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 2.7e-76 288.9 166 84.3
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 3.5e-76 288.5 156 89.1
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 3.5e-76 288.5 167 82.0
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 4.5e-76 288.1 170 80.0
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.5e-76 288.1 167 81.4
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 4.5e-76 288.1 172 82.6
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 1.0e-75 287.0 168 81.0
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.0e-75 287.0 167 80.8
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 1.3e-75 286.6 177 79.7
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 1.7e-75 286.2 177 79.7
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 2.3e-75 285.8 164 82.9
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 5.0e-75 284.6 177 79.1
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 5.0e-75 284.6 177 79.1
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 1.1e-74 283.5 168 85.1
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 1.1e-74 283.5 167 84.4
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 1.5e-74 283.1 177 79.1
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.5e-74 283.1 177 78.5
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 1.9e-74 282.7 177 80.8
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 1.9e-74 282.7 175 77.1
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 2.5e-74 282.3 178 75.8
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 7.3e-74 280.8 229 65.9
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 9.5e-74 280.4 170 80.0
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 9.5e-74 280.4 171 78.9
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 1.6e-73 279.6 170 81.2
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 1.6e-73 279.6 170 81.2
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 1.6e-73 279.6 170 81.2
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.6e-73 279.6 177 76.3
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 1.6e-73 279.6 167 82.0
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 2.1e-73 279.3 173 79.2
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 2.1e-73 279.3 169 81.1
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 3.6e-73 278.5 170 80.6
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 3.6e-73 278.5 170 80.6
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 3.6e-73 278.5 177 76.8
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 1.0e-72 276.9 177 74.0
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 4.0e-72 275.0 177 74.0
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 5.2e-72 274.6 179 75.4
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 6.8e-72 274.2 169 79.3
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 6.8e-72 274.2 173 76.3
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 1.5e-71 273.1 165 81.8
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 3.4e-71 271.9 165 81.2
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 4.4e-71 271.6 155 85.2
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 1.3e-70 270.0 178 74.7
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 1.3e-70 270.0 173 75.1
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 3.7e-70 268.5 170 74.1
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 6.4e-70 267.7 157 80.9
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 9.2e-69 263.8 166 75.3
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 1.2e-68 263.5 166 78.9
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 1.2e-68 263.5 159 80.5
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 1.3e-67 260.0 170 74.7
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 5.0e-67 258.1 177 71.2
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 3.3e-66 255.4 175 72.0
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 9.5e-66 253.8 177 66.7
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 1.2e-63 246.9 175 65.7
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 9.8e-63 243.8 168 69.6
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 3.7e-62 241.9 176 66.5
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 6.0e-60 234.6 168 68.5
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 8.6e-59 230.7 168 67.9
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 1.7e-54 216.5 124 83.9
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 4.1e-53 211.8 139 74.8
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 3.5e-52 208.8 124 83.1
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 3.5e-52 208.8 124 83.1
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 3.9e-51 205.3 124 81.5
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 3.9e-51 205.3 124 82.3
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 1.5e-47 193.4 115 81.7
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 1.3e-46 190.3 191 51.8
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 2.4e-45 186.0 117 79.5
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 5.3e-40 168.3 176 48.9
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 8.4e-38 161.0 95 82.1
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 4.2e-37 158.7 86 83.7
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.5e-36 155.6 99 75.8
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.3e-35 152.9 106 70.8
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.1e-34 150.6 103 71.8
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 8.7e-27 124.4 109 57.8
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 2.6e-23 112.8 60 83.3
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 1.0e-22 110.9 185 35.1
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 3.5e-20 102.4 119 47.1
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 4.6e-20 102.1 54 88.9
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 6.0e-20 101.7 118 51.7
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 1.8e-19 100.1 162 37.7
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.9e-18 96.7 142 38.0
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 4.3e-18 95.5 52 88.5
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 5.7e-18 95.1 97 53.6
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 6.2e-17 91.7 63 73.0
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 4.1e-16 89.0 48 87.5
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 3.4e-15 85.9 50 84.0
QL03p001871 Quercus lobata HOM05D004471 ORTHO05D337354 2.2e-06 56.6 36 77.8
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 2.2e-06 56.6 35 71.4


User provided reference genes

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