Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 7.6e-98 360.5 187 100.0
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.5e-66 256.5 175 77.1
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 8.0e-63 244.2 174 71.3
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 1.4e-62 243.4 174 69.5
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 5.7e-61 238.0 174 68.4
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.8e-60 235.7 178 66.9
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 2.8e-60 235.7 174 71.3
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 1.8e-59 233.0 178 68.0
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 2.4e-59 232.6 175 68.6
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 3.5e-58 228.8 153 77.8
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 3.5e-58 228.8 153 77.8
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 8.5e-57 224.2 153 76.5
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 1.5e-56 223.4 166 68.7
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 1.5e-56 223.4 166 68.7
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 2.5e-56 222.6 171 67.3
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 3.6e-55 218.8 175 66.3
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 1.2e-53 213.8 172 64.5
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 5.7e-53 211.5 174 64.4
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 9.8e-53 210.7 172 65.1
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 2.2e-52 209.5 169 66.3
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 1.1e-51 207.2 177 63.3
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 4.1e-51 205.3 174 60.9
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 4.1e-51 205.3 174 60.9
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 7.0e-51 204.5 185 58.9
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 9.1e-51 204.1 166 60.8
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 9.1e-51 204.1 166 60.8
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.2e-50 203.8 204 55.4
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 1.6e-50 203.4 178 59.0
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.3e-49 200.3 172 59.9
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.3e-49 200.3 172 60.5
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 2.9e-49 199.1 173 60.1
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 3.8e-49 198.7 172 59.9
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 3.8e-49 198.7 169 62.7
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 5.0e-49 198.4 172 59.9
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 8.5e-49 197.6 168 59.5
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 2.5e-48 196.1 166 62.0
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 3.2e-48 195.7 178 56.7
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 3.2e-48 195.7 162 61.7
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 4.2e-48 195.3 175 61.1
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 4.2e-48 195.3 167 59.3
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 7.2e-48 194.5 173 59.5
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 1.6e-47 193.4 156 64.7
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 4.7e-47 191.8 165 58.8
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 6.1e-47 191.4 173 58.4
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 6.1e-47 191.4 172 59.3
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 8.0e-47 191.0 165 58.8
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 1.4e-46 190.3 165 59.4
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 1.4e-46 190.3 170 57.1
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 1.8e-46 189.9 172 57.6
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 1.8e-46 189.9 166 58.4
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 4.0e-46 188.7 174 54.6
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 4.0e-46 188.7 165 58.2
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 6.8e-46 188.0 163 59.5
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 8.8e-46 187.6 163 59.5
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.5e-45 186.8 173 57.2
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 2.0e-45 186.4 165 58.8
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 2.0e-45 186.4 165 58.8
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 2.6e-45 186.0 172 57.6
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 3.4e-45 185.7 153 61.4
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 5.7e-45 184.9 165 58.2
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 7.5e-45 184.5 172 55.8
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 7.5e-45 184.5 163 57.7
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 2.8e-44 182.6 178 56.7
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 1.8e-43 179.9 163 56.4
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 4.1e-43 178.7 168 55.4
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 4.1e-43 178.7 168 55.4
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 5.4e-43 178.3 161 58.4
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 2.0e-42 176.4 168 55.4
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 5.9e-42 174.9 153 59.5
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 1.0e-41 174.1 173 55.5
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 1.3e-41 173.7 166 56.6
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 1.3e-41 173.7 145 61.4
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.7e-41 173.3 178 52.2
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 2.9e-41 172.6 190 51.1
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 2.9e-41 172.6 163 56.4
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 3.8e-41 172.2 172 54.1
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 5.0e-41 171.8 167 56.3
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 6.6e-41 171.4 156 57.7
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 8.6e-41 171.0 168 53.6
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 1.1e-40 170.6 131 66.4
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 4.3e-40 168.7 147 58.5
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 7.2e-40 167.9 177 53.1
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 9.5e-40 167.5 166 56.6
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 9.5e-40 167.5 153 55.6
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 1.6e-39 166.8 139 64.7
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.8e-39 166.0 129 63.6
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 8.0e-39 164.5 174 52.3
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 2.3e-38 162.9 173 51.4
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 5.2e-38 161.8 153 56.2
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 6.8e-38 161.4 139 63.3
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 6.8e-38 161.4 168 49.4
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 2.6e-37 159.5 90 82.2
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 3.4e-37 159.1 165 51.5
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 4.4e-37 158.7 159 52.8
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 5.7e-37 158.3 162 51.2
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 1.3e-36 157.1 152 53.3
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 2.2e-36 156.4 172 50.6
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 3.7e-36 155.6 167 53.9
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 4.9e-36 155.2 138 56.5
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 8.3e-36 154.5 164 50.0
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.1e-35 154.1 153 54.2
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 1.1e-35 154.1 172 50.0
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 1.4e-35 153.7 175 49.1
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 1.8e-35 153.3 165 49.7
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 3.2e-35 152.5 142 59.2
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 7.0e-35 151.4 269 37.2
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 7.0e-35 151.4 175 47.4
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 9.2e-35 151.0 164 48.2
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 1.6e-34 150.2 168 49.4
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 1.6e-34 150.2 168 49.4
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 1.6e-34 150.2 137 59.1
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 1.6e-34 150.2 165 49.7
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 2.0e-34 149.8 166 47.6
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 5.9e-34 148.3 218 44.5
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 5.9e-34 148.3 146 54.1
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 1.1e-32 144.1 160 49.4
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.5e-32 143.7 226 42.9
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 4.3e-32 142.1 175 49.7
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 5.6e-32 141.7 129 56.6
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 7.3e-32 141.4 223 41.7
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 1.0e-30 137.5 146 51.4
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 6.8e-30 134.8 145 52.4
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 8.9e-30 134.4 182 45.1
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.2e-29 134.0 162 45.7
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 8.3e-28 127.9 154 49.4
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 4.1e-27 125.6 144 50.0
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.2e-26 124.0 153 46.4
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 2.5e-24 116.3 79 63.3
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 2.5e-24 116.3 133 47.4
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 5.6e-24 115.2 91 59.3
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.2e-23 114.0 166 42.8
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 1.4e-22 110.5 87 72.4
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.8e-22 110.2 112 53.6
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 2.3e-22 109.8 167 43.1
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 3.1e-22 109.4 171 40.9
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 6.4e-20 101.7 163 38.7
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 3.0e-17 92.8 85 62.4
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 5.1e-17 92.0 84 61.9
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.9e-16 90.1 83 62.7
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 4.0e-14 82.4 140 40.0
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 6.8e-14 81.6 95 52.6
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 6.8e-14 81.6 80 58.8
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 8.9e-14 81.3 160 31.9
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 2.0e-13 80.1 163 35.0
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 3.4e-13 79.3 115 44.3
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 5.8e-13 78.6 80 56.2
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.4e-11 73.9 140 40.0
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.0e-09 67.8 50 74.0
Cre09.g387504 Chlamydomonas reinhardtii HOM05D004607 ORTHO05D005836 2.8e-07 59.7 172 26.7
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 4.7e-07 58.9 50 66.0
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 6.2e-07 58.5 48 68.8
CBR_g18647 Chara braunii HOM05D004607 ORTHO05D005836 2.4e-06 56.6 159 28.9
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 4.0e-06 55.8 53 58.5


User provided reference genes

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