Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.6e-38 162.2 77 100.0
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.6e-30 135.6 77 81.8
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 4.0e-29 131.0 79 82.3
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 1.5e-28 129.0 76 80.3
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 4.9e-27 124.0 61 91.8
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 4.9e-27 124.0 61 91.8
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 1.1e-26 122.9 69 85.5
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 1.9e-26 122.1 61 90.2
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 2.5e-26 121.7 69 79.7
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 9.3e-26 119.8 69 82.6
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 2.1e-25 118.6 69 82.6
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 2.7e-25 118.2 69 76.8
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 3.5e-25 117.9 77 75.3
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 1.8e-24 115.5 59 88.1
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 1.8e-24 115.5 59 88.1
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 1.8e-24 115.5 74 75.7
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 2.3e-24 115.2 66 78.8
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 3.0e-24 114.8 76 72.4
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 3.9e-24 114.4 61 83.6
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 6.7e-24 113.6 64 78.1
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 6.7e-24 113.6 74 73.0
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 1.1e-23 112.8 59 84.7
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 1.1e-23 112.8 58 86.2
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 1.1e-23 112.8 58 86.2
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 1.1e-23 112.8 58 86.2
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 1.9e-23 112.1 66 72.7
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 3.3e-23 111.3 75 72.0
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 5.7e-23 110.5 69 73.9
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 5.7e-23 110.5 64 76.6
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 7.4e-23 110.2 68 76.5
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 9.6e-23 109.8 71 70.4
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 1.3e-22 109.4 64 76.6
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 1.3e-22 109.4 74 71.6
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 1.6e-22 109.0 72 70.8
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 1.6e-22 109.0 67 76.1
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 2.8e-22 108.2 70 70.0
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 4.8e-22 107.5 59 81.4
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 6.3e-22 107.1 64 71.9
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 8.2e-22 106.7 66 74.2
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 1.1e-21 106.3 72 72.2
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 1.1e-21 106.3 72 72.2
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 1.1e-21 106.3 64 70.3
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 1.4e-21 105.9 74 70.3
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 1.8e-21 105.5 59 79.7
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 1.8e-21 105.5 71 67.6
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 1.8e-21 105.5 60 80.0
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 1.8e-21 105.5 63 69.8
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 2.4e-21 105.1 71 70.4
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 2.4e-21 105.1 70 68.6
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.4e-21 105.1 55 81.8
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 3.1e-21 104.8 71 66.2
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 3.1e-21 104.8 71 67.6
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 3.1e-21 104.8 71 67.6
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 3.1e-21 104.8 71 67.6
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 3.1e-21 104.8 60 80.0
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 4.1e-21 104.4 58 77.6
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 5.3e-21 104.0 55 81.8
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 5.3e-21 104.0 70 67.1
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 5.3e-21 104.0 59 74.6
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 6.9e-21 103.6 71 66.2
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 9.0e-21 103.2 70 67.1
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 9.0e-21 103.2 70 67.1
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 9.0e-21 103.2 59 78.0
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 9.0e-21 103.2 62 72.6
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 1.2e-20 102.8 82 67.1
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 1.5e-20 102.4 68 70.6
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 1.5e-20 102.4 56 78.6
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 2.0e-20 102.1 69 69.6
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 2.0e-20 102.1 69 69.6
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 2.0e-20 102.1 71 66.2
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 2.0e-20 102.1 69 69.6
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 2.0e-20 102.1 69 69.6
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 2.0e-20 102.1 70 64.3
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 2.0e-20 102.1 69 69.6
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 2.0e-20 102.1 69 69.6
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 2.0e-20 102.1 63 65.1
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 2.6e-20 101.7 74 68.9
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 2.6e-20 101.7 70 70.0
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 2.6e-20 101.7 56 80.4
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 3.4e-20 101.3 69 68.1
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 3.4e-20 101.3 55 81.8
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 4.5e-20 100.9 50 86.0
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 4.5e-20 100.9 57 80.7
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 5.9e-20 100.5 69 66.7
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 5.9e-20 100.5 70 65.7
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 5.9e-20 100.5 63 74.6
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 7.6e-20 100.1 67 67.2
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 1.0e-19 99.8 68 64.7
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 1.0e-19 99.8 57 73.7
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 1.3e-19 99.4 51 84.3
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 1.3e-19 99.4 68 67.6
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 2.2e-19 98.6 70 64.3
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.2e-19 98.6 51 84.3
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.2e-19 98.6 59 78.0
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.9e-19 98.2 73 67.1
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 3.8e-19 97.8 74 66.2
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.8e-19 97.8 73 65.8
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 8.5e-19 96.7 66 68.2
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 1.9e-18 95.5 45 93.3
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 2.5e-18 95.1 59 71.2
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 3.2e-18 94.7 52 80.8
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 3.2e-18 94.7 73 63.0
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 3.2e-18 94.7 73 63.0
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 1.2e-17 92.8 56 73.2
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 1.6e-17 92.4 56 71.4
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 2.3e-16 88.6 70 62.9
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 6.7e-16 87.0 44 86.4
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 6.7e-16 87.0 65 61.5
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 6.7e-16 87.0 65 61.5
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 3.3e-15 84.7 60 66.7
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 5.7e-15 84.0 45 82.2
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 9.7e-15 83.2 45 82.2
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 1.6e-14 82.4 48 72.9
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 2.4e-13 78.6 51 66.7
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 4.1e-13 77.8 53 66.0
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 5.3e-13 77.4 59 57.6
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 9.1e-13 76.6 50 66.0
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 1.2e-12 76.3 60 56.7
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 3.4e-12 74.7 52 61.5
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 3.8e-11 71.2 47 63.8
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 5.0e-11 70.9 62 53.2
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 9.4e-10 66.6 35 80.0
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 1.0e-08 63.2 58 48.3
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 1.0e-08 63.2 58 48.3
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 1.8e-08 62.4 52 55.8
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 2.3e-08 62.0 56 50.0
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 8.8e-08 60.1 28 89.3
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 7.4e-07 57.0 66 43.9
Actinidia00143 Actinidia chinensis HOM05D005857 ORTHO05D007193 4.8e-06 54.3 50 58.0
Zm00001eb341140 Zea mays HOM05D005857 ORTHO05D007193 6.3e-06 53.9 50 52.0


User provided reference genes

Program Settings