Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G176500 Carya illinoinensis HOM05D006686 ORTHO05D008463 1.4e-78 296.2 152 100.0
QL02p103152 Quercus lobata HOM05D006686 ORTHO05D008463 5.9e-48 194.5 131 76.3
Haze_09994 Corylus avellana HOM05D006686 ORTHO05D008463 7.9e-45 184.1 131 71.8
Cfa004450 Carpinus fangiana HOM05D006686 ORTHO05D008463 4.4e-43 178.3 130 70.8
COL.COLO4_26876 Corchorus olitorius HOM05D006686 ORTHO05D008463 1.5e-38 163.3 132 62.9
Thecc.06G000500 Theobroma cacao HOM05D006686 ORTHO05D008463 7.2e-38 161.0 131 60.3
Ciclev10001220m.g Citrus clementina HOM05D006686 ORTHO05D008463 1.6e-37 159.8 132 61.4
Gohir.A10G003400 Gossypium hirsutum HOM05D006686 ORTHO05D008463 2.7e-37 159.1 130 60.8
Duzib235G0699 Durio zibethinus HOM05D006686 ORTHO05D008463 4.7e-37 158.3 131 60.3
Gohir.D10G003400 Gossypium hirsutum HOM05D006686 ORTHO05D008463 1.4e-36 156.8 130 59.2
Gorai.011G003800 Gossypium raimondii HOM05D006686 ORTHO05D008463 1.4e-36 156.8 130 59.2
GSVIVG01023154001 Vitis vinifera HOM05D006686 ORTHO05D008463 4.0e-36 155.2 132 61.4
Atru.chr6.339 Acer truncatum HOM05D006686 ORTHO05D008463 2.0e-35 152.9 133 62.4
CsaV3_3G006630 Cucumis sativus L. HOM05D006686 ORTHO05D008463 4.4e-35 151.8 130 62.3
Prupe.1G584700 Prunus persica HOM05D006686 ORTHO05D008463 4.4e-35 151.8 134 64.9
MELO3C016473.2 Cucumis melo HOM05D006686 ORTHO05D008463 7.5e-35 151.0 130 61.5
Manes.07G028500 Manihot esculenta HOM05D006686 ORTHO05D008463 1.3e-34 150.2 132 63.6
CANSAT01G1449 Cannabis sativa HOM05D006686 ORTHO05D008463 2.8e-34 149.1 131 57.3
ClCG10G007390 Citrullus lanatus HOM05D006686 ORTHO05D008463 8.2e-34 147.5 130 60.0
MD08G1247400 Malus domestica HOM05D006686 ORTHO05D008463 5.3e-33 144.8 136 59.6
TAR381G1724 Trochodendron aralioides HOM05D006686 ORTHO05D008463 9.1e-33 144.1 121 61.2
Sabra01G0173400 Salix brachista HOM05D006686 ORTHO05D008463 1.2e-32 143.7 133 58.6
TWI59G1206 Tripterygium wilfordii HOM05D006686 ORTHO05D008463 1.2e-32 143.7 132 58.3
Dinv29673 Davidia involucrata HOM05D006686 ORTHO05D008463 5.9e-32 141.4 123 61.8
Nn5g27352 Nelumbo nucifera HOM05D006686 ORTHO05D008463 1.1e-30 137.1 122 58.2
Potri.004G228500 Populus trichocarpa HOM05D006686 ORTHO05D008463 1.1e-30 137.1 135 56.3
MBI03_g20875_MAGBIO Magnolia biondii HOM05D006686 ORTHO05D008463 7.2e-30 134.4 122 54.9
PGR042G1861 Punica granatum HOM05D006686 ORTHO05D008463 2.7e-29 132.5 94 68.1
FAN08G3117 Fragaria x ananassa HOM05D006686 ORTHO05D008463 8.0e-29 131.0 136 52.9
FAN04G2541 Fragaria x ananassa HOM05D006686 ORTHO05D008463 1.4e-28 130.2 134 53.0
Sc03g0004960 Simmondsia chinensis HOM05D006686 ORTHO05D008463 5.2e-28 128.3 123 53.7
Eucgr.G00081 Eucalyptus grandis HOM05D006686 ORTHO05D008463 2.0e-27 126.3 142 55.6
EL10Ac6g14006 Beta vulgaris HOM05D006686 ORTHO05D008463 2.6e-27 125.9 130 50.8
FAN18G1657 Fragaria x ananassa HOM05D006686 ORTHO05D008463 3.4e-27 125.6 134 52.2
Carub.0004s0259 Capsella rubella HOM05D006686 ORTHO05D008463 4.4e-27 125.2 130 50.8
HanXRQChr01g0013991 Helianthus annuus HOM05D006686 ORTHO05D008463 5.7e-27 124.8 130 50.8
ATR1089G117 Amborella trichopoda HOM05D006686 ORTHO05D008463 9.8e-27 124.0 132 53.0
FvH4_5g27990 Fragaria vesca HOM05D006686 ORTHO05D008463 9.8e-27 124.0 134 51.5
CSS0008654 Camellia sinensis var. sinensis HOM05D006686 ORTHO05D008463 1.3e-26 123.6 125 53.6
AUR62032459 Chenopodium quinoa HOM05D006686 ORTHO05D008463 1.7e-26 123.2 123 50.4
Actinidia01629 Actinidia chinensis HOM05D006686 ORTHO05D008463 1.1e-25 120.6 134 51.5
Cc02_g23500 Coffea canephora HOM05D006686 ORTHO05D008463 2.4e-25 119.4 129 48.8
Ah.03g136810 Amaranthus hybridus HOM05D006686 ORTHO05D008463 3.1e-25 119.0 135 48.9
Solyc01g103110.3 Solanum lycopersicum HOM05D006686 ORTHO05D008463 3.1e-25 119.0 121 52.9
Sopen01g045530 Solanum pennellii HOM05D006686 ORTHO05D008463 3.1e-25 119.0 121 52.9
MSTRG.16472 Avicennia marina HOM05D006686 ORTHO05D008463 9.1e-25 117.5 134 49.3
PGSC0003DMG402024871 Solanum tuberosum HOM05D006686 ORTHO05D008463 1.6e-24 116.7 121 52.1
Aqoxy5G01865 Aquilegia oxysepala HOM05D006686 ORTHO05D008463 2.7e-24 115.9 124 52.4
AT2G23390 Arabidopsis thaliana HOM05D006686 ORTHO05D008463 2.7e-24 115.9 130 47.7
Lsat_1_v5_gn_7_75180 Lactuca sativa HOM05D006686 ORTHO05D008463 3.5e-24 115.5 130 50.0
THA.LOC104809035 Tarenaya hassleriana HOM05D006686 ORTHO05D008463 4.5e-24 115.2 125 50.4
PSO447G0166 Papaver somniferum HOM05D006686 ORTHO05D008463 5.9e-24 114.8 126 51.6
ECA236G4971 Erigeron canadensis HOM05D006686 ORTHO05D008463 7.7e-24 114.4 136 52.2
Migut.B00728 Erythranthe guttata HOM05D006686 ORTHO05D008463 1.0e-23 114.0 121 50.4
SGA_v2.0_scaffold254G45251 Striga asiatica HOM05D006686 ORTHO05D008463 1.7e-23 113.2 93 55.9
PSO210G5299 Papaver somniferum HOM05D006686 ORTHO05D008463 2.2e-23 112.8 126 51.6
HPP92_005637 Vanilla planifolia HOM05D006686 ORTHO05D008463 2.9e-23 112.5 95 54.7
HPP92_005643 Vanilla planifolia HOM05D006686 ORTHO05D008463 5.0e-23 111.7 95 54.7
AL4G13300 Arabidopsis lyrata HOM05D006686 ORTHO05D008463 6.5e-23 111.3 130 47.7
CDE04G2622 Ceratophyllum demersum HOM05D006686 ORTHO05D008463 1.9e-22 109.8 121 50.4
DCAR_022282 Daucus carota HOM05D006686 ORTHO05D008463 7.2e-22 107.8 124 52.4
CAN.G855.45 Capsicum annuum HOM05D006686 ORTHO05D008463 9.5e-22 107.5 130 45.4
Peaxi162Scf00011g01843 Petunia axillaris HOM05D006686 ORTHO05D008463 1.6e-21 106.7 111 54.1
Rhsim05G0116000 Rhododendron simsii HOM05D006686 ORTHO05D008463 1.6e-21 106.7 93 58.1
Sp6g11350 Schrenkiella parvula HOM05D006686 ORTHO05D008463 1.6e-21 106.7 130 46.2
BcaB01g02944 Brassica carinata HOM05D006686 ORTHO05D008463 3.6e-21 105.5 132 44.7
BcaC01g04848 Brassica carinata HOM05D006686 ORTHO05D008463 4.7e-21 105.1 133 45.1
C03p33220 Brassica napus HOM05D006686 ORTHO05D008463 4.7e-21 105.1 133 45.1
BolC3t15644H Brassica oleracea HOM05D006686 ORTHO05D008463 4.7e-21 105.1 133 45.1
BraA03t11965Z Brassica rapa HOM05D006686 ORTHO05D008463 4.7e-21 105.1 133 44.4
Sp4g17050 Schrenkiella parvula HOM05D006686 ORTHO05D008463 8.0e-21 104.4 129 45.7
vmacro19835 Vaccinium macrocarpon HOM05D006686 ORTHO05D008463 1.0e-20 104.0 114 51.8
A03p27520 Brassica napus HOM05D006686 ORTHO05D008463 1.8e-20 103.2 152 41.4
Nitab4.5_0001057g0120 Nicotiana tabacum HOM05D006686 ORTHO05D008463 1.8e-20 103.2 128 50.0
Aa31LG3G6890 Aethionema arabicum HOM05D006686 ORTHO05D008463 4.0e-20 102.1 93 50.5
Thhalv10013635m.g Eutrema salsugineum HOM05D006686 ORTHO05D008463 5.7e-19 98.2 90 53.3
Nitab4.5_0001129g0010 Nicotiana tabacum HOM05D006686 ORTHO05D008463 9.8e-19 97.4 132 47.0
Os04g0442200 Oryza sativa ssp. japonica HOM05D006686 ORTHO05D008463 1.3e-18 97.1 94 48.9
arahy.Tifrunner.gnm1.ann1.A5H9W7 Arachis hypogaea HOM05D006686 ORTHO05D008463 1.8e-17 93.2 130 40.8
arahy.Tifrunner.gnm1.ann1.KKPS0T Arachis hypogaea HOM05D006686 ORTHO05D003399 3.1e-17 92.4 130 41.5
RcHm_v2.0_Chr7g0220191 Rosa chinensis HOM05D006686 ORTHO05D008463 3.1e-17 92.4 120 47.5
RcHm_v2.0_Chr7g0220471 Rosa chinensis HOM05D006686 ORTHO05D008463 5.4e-17 91.7 57 75.4
unitig_22.g6102 Utricularia gibba HOM05D006686 ORTHO05D008463 9.2e-17 90.9 97 50.5
Zm00001eb423040 Zea mays HOM05D006686 ORTHO05D008463 2.7e-16 89.4 97 49.5
Lalb_Chr07g0176791 Lupinus albus HOM05D006686 ORTHO05D008463 1.7e-15 86.7 133 40.6
Lj9C281G9 Lonicera japonica HOM05D006686 ORTHO05D008463 2.3e-15 86.3 57 75.4
Cpa.g.sc113.25 Carica papaya HOM05D006686 ORTHO05D008463 2.5e-14 82.8 53 75.5
Lj4g0021342 Lotus japonicus HOM05D006686 ORTHO05D008463 5.6e-14 81.6 94 47.9
Glyma.07G273000 Glycine max HOM05D006686 ORTHO05D008463 1.4e-12 77.0 112 39.3
SEGI_40259 Sequoiadendron giganteum HOM05D006686 ORTHO05D008463 1.2e-11 73.9 52 65.4
Ca_13532_v3 Cicer arietinum L. HOM05D006686 ORTHO05D008463 2.2e-10 69.7 135 37.0
Psat4g001080 Pisum sativum HOM05D006686 ORTHO05D008463 3.7e-10 68.9 50 64.0
VMungo1215G3175 Vigna mungo HOM05D006686 ORTHO05D008463 3.7e-10 68.9 50 60.0
Medtr4g134670 Medicago truncatula HOM05D006686 ORTHO05D008463 8.3e-10 67.8 57 59.6
Pp3c21_14930 Physcomitrium patens HOM05D006686 ORTHO05D008463 1.4e-09 67.0 95 38.9
AagrBONN_evm.TU.Sc2ySwM_362.840 Anthoceros agrestis HOM05D006686 ORTHO05D008463 1.2e-08 63.9 129 34.9
Mapoly0007s0219 Marchantia polymorpha HOM05D006686 ORTHO05D008463 1.6e-08 63.5 125 39.2
Phvul.003G075600 Phaseolus vulgaris HOM05D006686 ORTHO05D008463 2.7e-08 62.8 96 36.5
TPR.G5968 Trifolium pratense HOM05D006686 ORTHO05D008463 6.6e-07 58.2 46 60.9
Sed0016336 Sechium edule HOM05D006686 ORTHO05D008463 8.6e-07 57.8 29 82.8
CBR_g48699 Chara braunii HOM05D006686 ORTHO05D008463 1.9e-06 56.6 55 49.1
SMO364G0094 Selaginella moellendorffii HOM05D006686 ORTHO05D008463 5.6e-06 55.1 49 57.1


User provided reference genes

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