Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G174300 Carya illinoinensis HOM05D008094 ORTHO05D010082 4.9e-78 294.7 177 100.0
Cfa004482 Carpinus fangiana HOM05D008094 ORTHO05D010082 2.6e-23 112.8 177 49.7
QL02p100749 Quercus lobata HOM05D008094 ORTHO05D010082 1.8e-19 100.1 180 45.0
Potri.003G006100 Populus trichocarpa HOM05D008094 ORTHO05D010082 1.5e-18 97.1 186 42.5
TAR628G1718 Trochodendron aralioides HOM05D008094 ORTHO05D010082 2.8e-17 92.8 193 40.9
Prupe.1G579700 Prunus persica HOM05D008094 ORTHO05D010082 1.8e-16 90.1 187 51.3
MELO3C016497.2 Cucumis melo HOM05D008094 ORTHO05D010082 2.4e-16 89.7 178 42.1
CsaV3_3G006440 Cucumis sativus L. HOM05D008094 ORTHO05D010082 9.0e-16 87.8 178 42.7
Rhsim05G0113700 Rhododendron simsii HOM05D008094 ORTHO05D010082 1.5e-15 87.0 193 39.9
Psat1g222640 Pisum sativum HOM05D008094 ORTHO05D010082 2.6e-15 86.3 183 40.4
Aqoxy5G01193 Aquilegia oxysepala HOM05D008094 ORTHO05D010082 1.0e-14 84.3 190 40.5
Medtr2g005710 Medicago truncatula HOM05D008094 ORTHO05D010082 1.0e-14 84.3 184 40.8
Potri.004G224600 Populus trichocarpa HOM05D008094 ORTHO05D010082 1.0e-14 84.3 189 40.2
COL.COLO4_17715 Corchorus olitorius HOM05D008094 ORTHO05D010082 2.9e-14 82.8 196 41.3
Dinv29599 Davidia involucrata HOM05D008094 ORTHO05D010082 6.5e-14 81.6 143 45.5
Thecc.02G017400 Theobroma cacao HOM05D008094 ORTHO05D010082 8.4e-14 81.3 179 41.9
DCAR_001747 Daucus carota HOM05D008094 ORTHO05D010082 1.1e-13 80.9 189 37.6
Hma1.2p1_0633F.1_g192710 Hydrangea macrophylla HOM05D008094 ORTHO05D010082 2.5e-13 79.7 199 38.7
Nn3g18571 Nelumbo nucifera HOM05D008094 ORTHO05D010082 2.5e-13 79.7 189 40.2
FAN18G0201 Fragaria x ananassa HOM05D031323 ORTHO05D010082 4.2e-13 79.0 176 40.9
DCAR_029178 Daucus carota HOM05D008094 ORTHO05D010082 2.1e-12 76.6 187 37.4
Manes.10G117000 Manihot esculenta HOM05D008094 ORTHO05D010082 4.6e-12 75.5 191 38.7
CiPaw.07G234200 Carya illinoinensis HOM05D008094 ORTHO05D010082 7.9e-12 74.7 192 37.5
Nitab4.5_0000787g0100 Nicotiana tabacum HOM05D008094 ORTHO05D010082 1.3e-11 73.9 210 36.7
Cpa.g.sc113.38 Carica papaya HOM05D008094 ORTHO05D010082 5.1e-11 72.0 179 46.4
Duzib132G1075 Durio zibethinus HOM05D008094 ORTHO05D010082 5.1e-11 72.0 176 40.9
TPR.G2107 Trifolium pratense HOM05D008094 ORTHO05D010082 6.7e-11 71.6 186 37.6
MBI03_g07689_MAGBIO Magnolia biondii HOM05D008094 ORTHO05D010082 1.1e-10 70.9 185 35.7
RcHm_v2.0_Chr7g0220641 Rosa chinensis HOM05D031323 ORTHO05D010082 2.5e-10 69.7 172 38.4
Gohir.D01G175400 Gossypium hirsutum HOM05D008094 ORTHO05D010082 3.3e-10 69.3 177 41.8
Lj6g0003255 Lotus japonicus HOM05D008094 ORTHO05D010082 4.3e-10 68.9 134 44.0
Gorai.002G217700 Gossypium raimondii HOM05D008094 ORTHO05D010082 5.7e-10 68.6 177 40.7
Sed0001188 Sechium edule HOM05D008094 ORTHO05D010082 5.7e-10 68.6 176 39.8
Ca_00034_v3 Cicer arietinum L. HOM05D008094 ORTHO05D010082 7.4e-10 68.2 107 43.0
ClCG10G007120 Citrullus lanatus HOM05D008094 ORTHO05D010082 7.4e-10 68.2 187 36.9
Nitab4.5_0006171g0010 Nicotiana tabacum HOM05D008094 ORTHO05D010082 7.4e-10 68.2 211 36.0
Ciclev10002589m.g Citrus clementina HOM05D008094 ORTHO05D010082 1.6e-09 67.0 206 36.4
Nn1g09196 Nelumbo nucifera HOM05D008094 ORTHO05D010082 1.6e-09 67.0 190 34.2
arahy.Tifrunner.gnm1.ann1.4TXG74 Arachis hypogaea HOM05D008094 ORTHO05D010082 8.2e-09 64.7 109 46.8
Gohir.A01G184400 Gossypium hirsutum HOM05D008094 ORTHO05D010082 1.1e-08 64.3 180 40.0
FvH4_5g28660 Fragaria vesca HOM05D031323 ORTHO05D010082 1.8e-08 63.5 128 45.3
Sabra03G0003200 Salix brachista HOM05D008094 ORTHO05D010082 3.1e-08 62.8 154 37.0
arahy.Tifrunner.gnm1.ann1.8474VB Arachis hypogaea HOM05D008094 ORTHO05D010082 4.1e-08 62.4 103 47.6
arahy.Tifrunner.gnm1.ann1.V5JGY8 Arachis hypogaea HOM05D008094 ORTHO05D010082 4.1e-08 62.4 103 47.6
Oeu021214.1 Olea europaea HOM05D008094 ORTHO05D010082 6.9e-08 61.6 180 34.4
Nn3g19209 Nelumbo nucifera HOM05D008094 ORTHO05D010082 9.0e-08 61.2 146 39.7
Gohir.A03G215550 Gossypium hirsutum HOM05D008094 ORTHO05D010082 3.4e-07 59.3 129 43.4
Eucgr.I02770 Eucalyptus grandis HOM05D008094 ORTHO05D010082 7.7e-07 58.2 185 34.1
Lsat_1_v5_gn_5_104661 Lactuca sativa HOM05D008094 ORTHO05D010082 7.7e-07 58.2 201 32.3
Sopen01g045830 Solanum pennellii HOM05D008094 ORTHO05D010082 1.0e-06 57.8 210 33.3
ECA234G3545 Erigeron canadensis HOM05D008094 ORTHO05D010082 1.7e-06 57.0 206 30.6
Actinidia01611 Actinidia chinensis HOM05D008094 ORTHO05D010082 3.8e-06 55.8 80 56.2
Manes.07G025000 Manihot esculenta HOM05D008094 ORTHO05D010082 5.0e-06 55.5 152 36.8


User provided reference genes

Program Settings