Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 2.0e-170 602.4 321 100.0
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 2.4e-139 499.2 299 87.0
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 3.1e-139 498.8 299 86.6
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 9.0e-139 497.3 299 86.0
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 1.5e-138 496.5 299 85.6
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 2.0e-138 496.1 299 85.3
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 4.4e-138 495.0 299 86.0
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 5.8e-138 494.6 299 84.9
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 9.9e-138 493.8 299 85.6
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 9.9e-138 493.8 299 84.6
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 1.3e-137 493.4 299 84.6
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.7e-137 493.0 299 85.6
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 2.2e-137 492.7 299 84.6
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 2.9e-137 492.3 299 84.3
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 3.8e-137 491.9 299 84.9
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 4.9e-137 491.5 299 84.9
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 1.1e-136 490.3 299 84.9
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 1.1e-136 490.3 299 84.9
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 1.1e-136 490.3 299 85.3
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.4e-136 490.0 299 84.3
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 1.4e-136 490.0 299 84.3
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.4e-136 490.0 299 84.6
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 1.9e-136 489.6 304 84.5
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 2.4e-136 489.2 299 84.3
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 2.4e-136 489.2 299 84.3
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 2.4e-136 489.2 299 83.3
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 3.2e-136 488.8 299 84.3
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 3.2e-136 488.8 296 86.1
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 4.2e-136 488.4 299 83.9
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 5.4e-136 488.0 299 84.6
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 5.4e-136 488.0 298 83.6
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 7.1e-136 487.6 299 85.3
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 9.3e-136 487.3 299 83.6
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 1.6e-135 486.5 299 84.6
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 1.6e-135 486.5 299 84.3
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 2.1e-135 486.1 299 82.9
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.1e-135 486.1 299 84.3
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 2.1e-135 486.1 299 84.6
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 4.6e-135 485.0 317 80.8
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 7.8e-135 484.2 299 82.6
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 7.8e-135 484.2 299 82.6
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 7.8e-135 484.2 299 84.9
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 7.8e-135 484.2 299 83.6
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 7.8e-135 484.2 308 81.5
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 1.3e-134 483.4 299 82.6
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 1.3e-134 483.4 299 82.9
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 1.3e-134 483.4 299 82.9
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 1.7e-134 483.0 299 83.3
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.7e-134 483.0 299 83.3
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 2.3e-134 482.6 299 82.9
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 2.3e-134 482.6 299 83.9
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 2.3e-134 482.6 299 83.3
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 2.3e-134 482.6 299 83.3
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 2.3e-134 482.6 299 83.3
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 3.0e-134 482.3 299 81.6
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 3.0e-134 482.3 299 82.6
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 3.9e-134 481.9 299 82.6
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 3.9e-134 481.9 299 82.6
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 3.9e-134 481.9 300 83.3
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 3.9e-134 481.9 299 81.9
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 5.1e-134 481.5 299 82.9
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 5.1e-134 481.5 300 83.7
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 8.7e-134 480.7 299 82.9
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 8.7e-134 480.7 299 82.9
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 8.7e-134 480.7 299 82.9
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 8.7e-134 480.7 300 83.0
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 8.7e-134 480.7 299 82.9
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 1.1e-133 480.3 299 82.3
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 1.1e-133 480.3 299 81.9
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 1.5e-133 479.9 299 82.9
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.5e-133 479.9 299 82.6
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.5e-133 479.9 299 82.9
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 1.9e-133 479.6 299 82.3
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 1.9e-133 479.6 299 82.6
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 1.9e-133 479.6 299 82.6
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 2.5e-133 479.2 298 83.2
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 2.5e-133 479.2 317 79.8
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 4.3e-133 478.4 299 82.3
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 5.6e-133 478.0 299 82.3
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 5.6e-133 478.0 299 82.3
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 5.6e-133 478.0 299 81.9
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 7.3e-133 477.6 299 82.3
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 1.3e-132 476.9 298 82.2
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 2.1e-132 476.1 299 81.9
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.8e-132 475.7 299 81.6
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 3.6e-132 475.3 298 81.5
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 4.8e-132 474.9 299 81.9
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 4.8e-132 474.9 299 81.9
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 4.8e-132 474.9 299 80.9
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 6.2e-132 474.6 299 81.6
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 6.2e-132 474.6 299 81.6
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 6.2e-132 474.6 299 81.6
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 6.2e-132 474.6 299 81.6
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 1.1e-131 473.8 299 80.3
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 1.4e-131 473.4 300 82.3
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 2.4e-131 472.6 299 79.9
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 2.4e-131 472.6 298 80.5
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.2e-130 470.3 325 77.5
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 4.5e-130 468.4 323 76.5
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 9.9e-130 467.2 299 81.9
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 6.4e-129 464.5 340 74.4
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 2.1e-127 459.5 298 77.5
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 4.6e-127 458.4 310 78.4
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 6.0e-127 458.0 300 78.7
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 2.3e-126 456.1 299 80.3
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 6.7e-126 454.5 299 78.6
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 2.5e-125 452.6 298 76.2
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 5.6e-125 451.4 299 80.3
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 2.8e-124 449.1 299 77.9
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 2.2e-121 439.5 377 65.3
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.1e-120 437.2 293 75.8
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 7.4e-117 424.5 298 73.8
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 1.3e-116 423.7 298 72.5
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 6.2e-116 421.4 298 71.5
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 1.1e-115 420.6 298 72.8
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 6.9e-115 417.9 306 71.2
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 1.2e-114 417.2 300 70.0
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 2.6e-114 416.0 298 70.8
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 3.4e-114 415.6 298 74.2
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.3e-113 413.7 257 82.5
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 4.6e-111 405.2 298 71.1
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 3.9e-110 402.1 256 80.9
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 3.9e-110 402.1 258 79.5
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 5.1e-110 401.7 301 70.1
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 3.3e-109 399.1 243 84.0
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.3e-109 399.1 267 76.8
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 1.7e-100 370.2 299 68.9
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 1.8e-99 366.7 458 49.6
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 2.6e-98 362.8 301 66.8
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 3.5e-90 335.9 198 89.4
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 2.2e-84 316.6 231 69.3
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 2.2e-84 316.6 299 60.5
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 3.6e-79 299.3 178 87.1
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 8.8e-78 294.7 318 56.0
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 1.0e-73 281.2 177 79.7
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 5.2e-70 268.9 365 44.1
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 1.3e-65 254.2 161 78.3
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.8e-63 246.5 173 70.5
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 1.4e-62 244.2 195 64.6
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 3.7e-52 209.5 136 76.5
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 8.3e-52 208.4 193 56.5
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.4e-46 191.0 120 79.2
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 8.6e-41 171.8 120 73.3
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 1.4e-38 164.5 107 81.3
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 2.4e-35 153.7 102 80.4
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.5e-32 143.7 103 70.9
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 6.8e-30 135.6 127 63.0
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 7.6e-29 132.1 101 71.3
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 6.6e-25 119.0 69 88.4
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 4.3e-24 116.3 78 79.5
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 6.2e-15 85.9 63 74.6
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 4.5e-13 79.7 50 76.0
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 4.9e-12 76.3 174 36.8
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 5.4e-11 72.8 58 69.0
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 5.4e-11 72.8 43 86.0
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 1.6e-10 71.2 141 34.8
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 7.9e-10 68.9 43 79.1
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.3e-09 68.2 43 79.1
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 3.9e-09 66.6 38 84.2
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 5.6e-08 62.8 94 42.6
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 6.2e-07 59.3 39 79.5


User provided reference genes

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