Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 3.8e-87 324.7 152 100.0
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 1.1e-70 270.0 151 80.8
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 8.5e-63 243.8 126 86.5
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 1.1e-62 243.4 145 77.9
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.5e-62 242.3 145 77.9
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 3.2e-62 241.9 152 78.3
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 9.3e-62 240.4 122 87.7
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 9.3e-62 240.4 140 79.3
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 9.3e-62 240.4 145 74.5
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 3.6e-61 238.4 144 78.5
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 6.1e-61 237.7 140 78.6
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 1.3e-60 236.5 152 75.7
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 2.3e-60 235.7 150 73.3
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 3.0e-60 235.3 128 82.0
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 3.9e-60 235.0 127 79.5
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 5.1e-60 234.6 149 74.5
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 6.7e-60 234.2 151 74.8
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 1.5e-59 233.0 154 71.4
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 1.9e-59 232.6 151 74.2
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 3.3e-59 231.9 123 81.3
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 4.3e-59 231.5 151 73.5
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 5.7e-59 231.1 150 70.0
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 7.4e-59 230.7 149 71.8
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 9.7e-59 230.3 148 75.0
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 1.3e-58 229.9 147 75.5
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 1.6e-58 229.6 131 78.6
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 1.6e-58 229.6 151 69.5
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 4.8e-58 228.0 118 83.1
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 4.8e-58 228.0 151 73.5
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 6.3e-58 227.6 149 71.8
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 6.3e-58 227.6 151 71.5
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 6.3e-58 227.6 151 72.2
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 8.2e-58 227.3 127 77.2
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 8.2e-58 227.3 119 83.2
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 1.1e-57 226.9 124 81.5
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 1.1e-57 226.9 151 71.5
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 1.4e-57 226.5 150 72.7
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.8e-57 226.1 151 70.9
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 2.4e-57 225.7 151 70.9
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 5.3e-57 224.6 151 70.2
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.5e-56 223.0 151 70.2
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 1.5e-56 223.0 149 71.8
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 2.0e-56 222.6 151 69.5
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.6e-56 222.2 150 67.3
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 2.6e-56 222.2 153 71.9
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 3.4e-56 221.9 146 69.9
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 4.5e-56 221.5 126 77.8
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 7.7e-56 220.7 151 66.9
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 7.7e-56 220.7 151 66.2
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 7.7e-56 220.7 134 76.1
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 1.3e-55 219.9 147 70.7
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 2.2e-55 219.2 151 65.6
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 2.9e-55 218.8 120 76.7
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 3.8e-55 218.4 151 66.2
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 3.8e-55 218.4 141 70.2
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 5.0e-55 218.0 151 66.2
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 6.5e-55 217.6 147 68.7
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 6.5e-55 217.6 147 70.7
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 8.5e-55 217.2 153 68.0
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 1.4e-54 216.5 147 67.3
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 1.4e-54 216.5 147 69.4
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.4e-54 216.5 145 72.4
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 1.9e-54 216.1 146 68.5
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 4.2e-54 214.9 151 65.6
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 4.2e-54 214.9 147 69.4
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 4.2e-54 214.9 151 66.2
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 4.2e-54 214.9 133 74.4
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 7.2e-54 214.2 127 72.4
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 9.4e-54 213.8 141 68.8
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 1.2e-53 213.4 147 68.0
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 1.2e-53 213.4 147 68.0
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 1.2e-53 213.4 147 68.7
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 1.2e-53 213.4 150 67.3
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 2.1e-53 212.6 147 68.0
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 2.1e-53 212.6 148 66.9
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 2.1e-53 212.6 151 65.6
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 3.6e-53 211.8 145 68.3
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 4.6e-53 211.5 133 71.4
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 1.4e-52 209.9 129 74.4
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 1.8e-52 209.5 147 68.0
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 1.8e-52 209.5 147 66.7
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.8e-52 209.5 141 67.4
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 1.8e-52 209.5 146 66.4
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 6.7e-52 207.6 125 74.4
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 6.7e-52 207.6 133 69.9
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 3.3e-51 205.3 151 65.6
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 3.3e-51 205.3 151 64.2
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 3.7e-50 201.8 119 71.4
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 3.7e-50 201.8 119 71.4
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 1.8e-49 199.5 152 64.5
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 2.4e-49 199.1 120 68.3
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 1.5e-48 196.4 141 59.6
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 2.0e-48 196.1 148 59.5
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 2.0e-48 196.1 169 57.4
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 2.6e-48 195.7 138 62.3
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 2.6e-48 195.7 109 77.1
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 7.7e-48 194.1 125 70.4
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 2.9e-47 192.2 144 64.6
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 2.9e-47 192.2 148 59.5
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 5.7e-43 177.9 145 61.4
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 1.9e-38 162.9 85 82.4
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 3.0e-36 155.6 83 80.7
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 1.2e-35 153.7 145 56.6
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 2.2e-34 149.4 128 52.3
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 1.0e-31 140.6 117 53.0
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.1e-30 137.1 82 73.2
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 2.7e-29 132.5 97 55.7
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 4.7e-29 131.7 74 75.7
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 1.8e-28 129.8 151 48.3
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 2.0e-27 126.3 126 50.0
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 5.7e-27 124.8 90 61.1
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 9.8e-27 124.0 119 53.8
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 9.8e-27 124.0 90 61.1
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 1.7e-26 123.2 114 44.7
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 9.1e-25 117.5 93 52.7
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 1.6e-24 116.7 89 55.1
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 3.6e-21 105.5 59 76.3
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 1.4e-20 103.6 93 50.5
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 2.3e-20 102.8 92 52.2
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 1.2e-19 100.5 99 44.4
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 1.3e-15 87.0 67 58.2
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.5e-14 82.8 83 51.8
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 3.0e-12 75.9 56 55.4
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 1.2e-11 73.9 64 53.1
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.7e-10 70.1 83 47.0
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 5.4e-09 65.1 37 70.3
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 2.7e-08 62.8 39 64.1
FAN15G0330 Fragaria x ananassa HOM05D005641 ORTHO05D007953 3.9e-07 58.9 41 53.7
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 1.5e-06 57.0 39 61.5
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 1.5e-06 57.0 86 38.4
Nitab4.5_0003335g0050 Nicotiana tabacum HOM05D002499 ORTHO05D002812 5.6e-06 55.1 61 34.4
GSVIVG01029385001 Vitis vinifera HOM05D005641 ORTHO05D007953 5.6e-06 55.1 32 68.8


User provided reference genes

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