Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.9e-201 704.5 341 100.0
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 9.8e-168 593.6 355 82.8
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 8.3e-167 590.5 354 82.8
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 8.8e-161 570.5 352 79.8
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 5.9e-157 557.8 350 76.9
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 6.1e-154 547.7 352 76.7
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 4.0e-153 545.0 358 75.7
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 2.6e-152 542.3 348 75.3
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 9.8e-152 540.4 347 75.8
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 2.9e-151 538.9 346 76.6
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.1e-150 537.0 357 74.2
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.4e-150 535.8 358 74.3
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 5.4e-150 534.6 350 74.0
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 1.2e-149 533.5 347 74.1
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 7.8e-149 530.8 346 75.1
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 7.8e-149 530.8 346 75.7
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 1.3e-148 530.0 349 75.1
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 1.3e-148 530.0 347 74.4
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 2.3e-148 529.3 360 74.7
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 3.0e-148 528.9 366 72.4
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 6.6e-148 527.7 348 72.4
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 4.3e-147 525.0 347 74.9
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 7.3e-147 524.2 346 72.5
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 9.5e-147 523.9 348 72.7
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 9.5e-147 523.9 349 73.6
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 1.6e-146 523.1 346 73.4
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 3.6e-146 521.9 338 74.9
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 4.7e-146 521.5 338 74.9
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 6.2e-146 521.2 362 72.4
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.0e-145 520.4 347 72.6
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.4e-145 520.0 347 72.6
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.4e-145 520.0 372 70.4
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 1.8e-145 519.6 354 72.3
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.8e-145 519.6 340 74.7
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 2.3e-145 519.2 374 69.8
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 3.1e-145 518.8 359 71.9
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.5e-144 516.5 376 69.4
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.0e-144 516.2 347 72.3
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 2.6e-144 515.8 355 70.7
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 2.6e-144 515.8 334 73.7
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 6.4e-143 511.1 374 69.5
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 5.4e-142 508.1 358 68.4
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 9.2e-142 507.3 356 70.8
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 9.2e-142 507.3 356 70.8
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 1.3e-140 503.4 355 69.9
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.3e-140 503.4 375 68.5
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.7e-140 503.1 357 69.5
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 6.6e-140 501.1 351 70.7
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 1.5e-139 500.0 355 69.6
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 1.5e-139 500.0 356 68.8
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 5.6e-139 498.0 356 70.5
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 7.3e-139 497.7 349 69.3
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 9.5e-139 497.3 356 69.4
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.2e-138 496.9 346 69.4
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.2e-138 496.9 349 70.8
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 2.1e-138 496.1 369 67.8
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 2.8e-138 495.7 342 71.9
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.6e-138 495.4 349 69.1
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 3.6e-138 495.4 344 70.9
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 4.7e-138 495.0 355 69.3
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 4.7e-138 495.0 357 69.5
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 6.2e-138 494.6 349 71.6
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 8.1e-138 494.2 345 70.7
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 1.4e-137 493.4 342 71.6
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 4.0e-137 491.9 348 70.4
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 5.2e-137 491.5 352 69.6
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 5.2e-137 491.5 359 68.5
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 2.0e-136 489.6 359 69.1
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 4.4e-136 488.4 357 68.3
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 4.4e-136 488.4 356 67.7
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 5.8e-136 488.0 355 69.3
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 2.9e-135 485.7 365 68.8
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 3.7e-135 485.3 350 68.3
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.1e-134 483.8 349 68.8
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 1.4e-134 483.4 356 67.1
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 2.4e-134 482.6 356 66.9
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 9.2e-134 480.7 349 68.8
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 2.1e-133 479.6 349 69.3
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 6.0e-133 478.0 352 67.9
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 1.0e-132 477.2 349 69.6
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 3.0e-132 475.7 349 67.9
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 3.9e-132 475.3 349 68.5
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 5.1e-132 474.9 349 67.9
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 8.6e-132 474.2 348 68.1
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 3.3e-131 472.2 348 69.3
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.3e-131 472.2 349 68.5
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 1.6e-130 469.9 348 68.1
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 2.8e-130 469.2 349 67.0
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 2.8e-130 469.2 348 68.1
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 8.1e-130 467.6 349 67.0
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.1e-129 467.2 349 67.3
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 2.3e-129 466.1 325 70.5
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 6.8e-129 464.5 349 67.0
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 1.2e-128 463.8 349 67.9
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 1.2e-128 463.8 349 67.9
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.2e-128 463.8 352 66.8
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 1.7e-127 459.9 356 64.3
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 8.4e-127 457.6 348 64.9
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 1.1e-126 457.2 341 66.9
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 1.9e-126 456.4 341 66.9
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 3.2e-126 455.7 349 66.8
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 7.1e-126 454.5 375 63.2
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 6.0e-125 451.4 349 65.3
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 1.7e-124 449.9 341 66.0
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 3.0e-124 449.1 327 70.0
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 6.6e-124 448.0 348 66.4
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 8.6e-124 447.6 348 64.4
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 1.9e-123 446.4 373 60.1
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 5.6e-123 444.9 353 64.6
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 7.3e-123 444.5 375 59.2
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 1.2e-122 443.7 341 65.4
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 8.1e-122 441.0 341 66.9
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 1.1e-121 440.7 360 60.0
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 3.4e-120 435.6 367 61.3
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 5.8e-120 434.9 342 64.0
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 4.9e-119 431.8 314 69.1
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 7.1e-118 427.9 348 63.5
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 7.1e-118 427.9 358 61.2
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 1.0e-116 424.1 325 65.5
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 5.1e-116 421.8 355 61.4
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 1.3e-114 417.2 423 53.7
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 5.3e-113 411.8 328 65.9
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 5.3e-113 411.8 527 45.5
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.5e-112 410.2 329 65.7
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 2.1e-109 399.8 335 61.2
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 3.0e-108 396.0 357 57.7
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 3.3e-107 392.5 425 51.5
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 9.0e-105 384.4 415 50.8
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 8.4e-103 377.9 329 57.8
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.6e-101 373.6 365 54.5
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 4.6e-101 372.1 372 55.4
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 7.9e-101 371.3 319 61.8
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 5.5e-94 348.6 341 55.7
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 3.9e-92 342.4 335 54.6
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 6.3e-90 335.1 230 70.0
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 2.7e-85 319.7 382 45.3
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 9.0e-81 304.7 377 46.4
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 5.7e-75 285.4 375 44.3
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 1.2e-72 277.7 168 76.8
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.7e-71 273.9 302 53.6
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 1.9e-70 270.4 338 44.7
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 3.2e-70 269.6 374 44.1
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 5.5e-70 268.9 218 65.6
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 6.1e-69 265.4 226 65.5
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 3.7e-66 256.1 217 58.1
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 5.3e-65 252.3 210 63.3
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 9.1e-65 251.5 254 52.8
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 9.1e-65 251.5 254 52.8
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 1.8e-60 237.3 388 37.1
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 1.2e-59 234.6 192 63.0
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.1e-54 218.0 127 84.3
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 2.2e-47 193.7 170 58.8
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 1.7e-42 177.6 128 63.3
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 9.2e-41 171.8 358 34.1
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 3.0e-36 156.8 102 72.5
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.9e-34 149.4 338 33.7
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 7.3e-30 135.6 122 57.4
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 1.5e-27 127.9 76 76.3
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 7.5e-19 99.0 78 67.9
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 6.0e-16 89.4 105 46.7
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.2e-08 65.1 33 78.8


User provided reference genes

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