Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 3.5e-55 218.0 106 100.0
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 7.5e-18 94.0 110 57.3
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 6.4e-17 90.9 99 58.6
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 1.2e-15 86.7 91 61.5
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 1.3e-14 83.2 102 52.0
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 1.7e-14 82.8 93 55.9
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 2.3e-14 82.4 90 55.6
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 3.9e-14 81.6 113 50.4
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 1.5e-13 79.7 102 52.0
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 1.5e-13 79.7 101 51.5
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 1.9e-13 79.3 73 64.4
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 1.9e-13 79.3 73 60.3
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 5.6e-13 77.8 108 45.4
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 7.3e-13 77.4 101 47.5
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 9.5e-13 77.0 110 49.1
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 1.2e-12 76.6 104 47.1
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 1.2e-12 76.6 104 47.1
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 3.6e-12 75.1 85 56.5
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 4.7e-12 74.7 108 49.1
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 4.7e-12 74.7 74 62.2
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 1.1e-11 73.6 81 53.1
Eucgr.G01220 Eucalyptus grandis HOM05D007107 ORTHO05D009198 1.1e-11 73.6 88 48.9
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.3e-11 72.4 107 49.5
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 2.3e-11 72.4 116 44.8
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 3.1e-11 72.0 111 48.6
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 4.0e-11 71.6 104 50.0
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 5.2e-11 71.2 107 49.5
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 5.2e-11 71.2 111 46.8
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 6.8e-11 70.9 92 47.8
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 8.9e-11 70.5 103 46.6
Psat6g214960 Pisum sativum HOM05D007107 ORTHO05D009198 1.2e-10 70.1 106 45.3
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 1.2e-10 70.1 94 46.8
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 1.5e-10 69.7 107 45.8
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 1.5e-10 69.7 74 60.8
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.5e-10 69.7 104 49.0
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 1.5e-10 69.7 104 49.0
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 2.0e-10 69.3 74 60.8
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.0e-10 69.3 92 54.3
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 2.6e-10 68.9 109 47.7
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 9.9e-10 67.0 107 44.9
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 9.9e-10 67.0 93 45.2
Medtr1g106215 Medicago truncatula HOM05D007107 ORTHO05D009198 1.7e-09 66.2 74 56.8
Sed0004586 Sechium edule HOM05D007107 ORTHO05D009198 1.7e-09 66.2 102 47.1
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 2.2e-09 65.9 78 53.8
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 2.9e-09 65.5 87 51.7
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 2.9e-09 65.5 83 53.0
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 4.9e-09 64.7 85 54.1
Ca_11033_v3 Cicer arietinum L. HOM05D007107 ORTHO05D009198 4.9e-09 64.7 74 55.4
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 4.9e-09 64.7 113 46.0
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 4.9e-09 64.7 81 49.4
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 8.4e-09 63.9 60 61.7
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 1.4e-08 63.2 93 44.1
AT3G19615 Arabidopsis thaliana HOM05D007107 ORTHO05D009198 1.4e-08 63.2 93 44.1
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 1.4e-08 63.2 81 54.3
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 2.4e-08 62.4 101 45.5
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 2.4e-08 62.4 72 52.8
Rhsim11G0153200 Rhododendron simsii HOM05D007107 ORTHO05D009198 2.4e-08 62.4 83 47.0
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 3.2e-08 62.0 102 43.1
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 4.1e-08 61.6 87 51.7
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 5.4e-08 61.2 72 52.8
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 5.4e-08 61.2 85 49.4
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 7.1e-08 60.8 72 47.2
CSS0000313 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 9.2e-08 60.5 87 46.0
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 9.2e-08 60.5 61 60.7
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 1.2e-07 60.1 88 47.7
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 1.2e-07 60.1 88 47.7
DCAR_001690 Daucus carota HOM05D007107 ORTHO05D009198 3.5e-07 58.5 55 60.0
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 4.6e-07 58.2 91 45.1
PGSC0003DMG400042480 Solanum tuberosum HOM05D007107 ORTHO05D009198 4.6e-07 58.2 89 44.9
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 6.0e-07 57.8 94 48.9
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 6.0e-07 57.8 92 39.1
ECA234G2040 Erigeron canadensis HOM05D007107 ORTHO05D009198 6.0e-07 57.8 87 46.0
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 6.0e-07 57.8 87 43.7
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 7.8e-07 57.4 92 39.1
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 7.8e-07 57.4 72 45.8
FvH4_2g04291 Fragaria vesca HOM05D007107 ORTHO05D025431 7.8e-07 57.4 99 40.4
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 7.8e-07 57.4 71 54.9
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 7.8e-07 57.4 61 57.4
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 1.0e-06 57.0 61 62.3
Ah.14g085610 Amaranthus hybridus HOM05D007107 ORTHO05D009198 1.7e-06 56.2 93 46.2
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 2.3e-06 55.8 88 44.3
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 2.3e-06 55.8 88 44.3
BcaC09g48926 Brassica carinata HOM05D007107 ORTHO05D009198 3.9e-06 55.1 88 40.9
C01p44500 Brassica napus HOM05D007107 ORTHO05D009198 3.9e-06 55.1 88 40.9
BolC1t04415H Brassica oleracea HOM05D007107 ORTHO05D009198 3.9e-06 55.1 88 40.9
BcaB04g19054 Brassica carinata HOM05D007107 ORTHO05D009198 5.1e-06 54.7 84 42.9
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 5.1e-06 54.7 58 50.0
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 8.6e-06 53.9 99 42.4


User provided reference genes

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