Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G165500 Carya illinoinensis HOM05D002857 ORTHO05D008347 6.7e-90 334.0 165 100.0
QL07p014115 Quercus lobata HOM05D002857 ORTHO05D008347 4.2e-84 314.7 164 91.5
CiPaw.05G017800 Carya illinoinensis HOM05D002857 ORTHO05D008347 7.2e-84 313.9 165 93.3
Cfa009507 Carpinus fangiana HOM05D002857 ORTHO05D008347 1.3e-80 303.1 165 89.1
Prupe.8G144800 Prunus persica HOM05D002857 ORTHO05D008347 2.2e-80 302.4 162 88.9
Haze_10256 Corylus avellana HOM05D002857 ORTHO05D008347 3.7e-80 301.6 165 88.5
Cfa004654 Carpinus fangiana HOM05D002857 ORTHO05D008347 4.8e-80 301.2 165 88.5
MD05G1100100 Malus domestica HOM05D002857 ORTHO05D008347 2.4e-79 298.9 165 86.7
Potri.009G088200 Populus trichocarpa HOM05D002857 ORTHO05D008347 4.1e-79 298.1 165 87.3
GSVIVG01037837001 Vitis vinifera HOM05D002857 ORTHO05D008347 7.0e-79 297.4 165 87.3
Dinv15807 Davidia involucrata HOM05D002857 ORTHO05D008347 1.6e-78 296.2 165 86.1
MD05G1100400 Malus domestica HOM05D002857 ORTHO05D008347 3.5e-78 295.0 165 85.5
Sabra09G0068300 Salix brachista HOM05D002857 ORTHO05D008347 5.9e-78 294.3 165 86.1
Cfa010108 Carpinus fangiana HOM05D002857 ORTHO05D008347 2.9e-77 292.0 167 86.8
Duzib132G1128 Durio zibethinus HOM05D002857 ORTHO05D008347 3.8e-77 291.6 165 83.6
RcHm_v2.0_Chr6g0253801 Rosa chinensis HOM05D002857 ORTHO05D008347 1.5e-76 289.7 165 83.6
FvH4_2g04342 Fragaria vesca HOM05D002857 ORTHO05D008347 2.5e-76 288.9 163 84.0
Manes.10G081600 Manihot esculenta HOM05D002857 ORTHO05D008347 3.2e-76 288.5 163 82.8
Atru.chr5.2351 Acer truncatum HOM05D002857 ORTHO05D008347 5.5e-76 287.7 165 83.6
CSS0041876 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D008347 5.5e-76 287.7 162 82.7
Ciclev10029201m.g Citrus clementina HOM05D002857 ORTHO05D008347 7.2e-76 287.3 160 85.0
TAR381G0590 Trochodendron aralioides HOM05D002857 ORTHO05D008347 1.2e-75 286.6 165 83.0
Cpa.g.sc106.48 Carica papaya HOM05D002857 ORTHO05D008347 1.0e-74 283.5 164 82.9
Gohir.D12G019900 Gossypium hirsutum HOM05D002857 ORTHO05D008347 1.4e-74 283.1 163 80.4
Gorai.008G020300 Gossypium raimondii HOM05D002857 ORTHO05D008347 2.3e-74 282.3 163 79.8
TWI14G1023 Tripterygium wilfordii HOM05D002857 ORTHO05D008347 4.0e-74 281.6 159 83.6
vmacro19465 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 4.0e-74 281.6 161 80.1
vmacro23229 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 4.0e-74 281.6 161 80.1
Gohir.A12G019700 Gossypium hirsutum HOM05D002857 ORTHO05D008347 5.2e-74 281.2 163 79.8
ClCG10G010270 Citrullus lanatus HOM05D002857 ORTHO05D008347 6.8e-74 280.8 162 81.5
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 8.8e-74 280.4 163 79.8
Nn5g30580 Nelumbo nucifera HOM05D002857 ORTHO05D008347 2.6e-73 278.9 165 81.2
Eucgr.I01062 Eucalyptus grandis HOM05D002857 ORTHO05D008347 5.7e-73 277.7 165 77.6
Lj5A219T41 Lonicera japonica HOM05D002857 ORTHO05D008347 5.7e-73 277.7 160 78.8
HanXRQChr01g0025491 Helianthus annuus HOM05D002857 ORTHO05D008347 7.5e-73 277.3 165 80.0
Potri.001G293700 Populus trichocarpa HOM05D002857 ORTHO05D008347 9.8e-73 276.9 165 81.2
Oeu010450.1 Olea europaea HOM05D002857 ORTHO05D008347 1.3e-72 276.6 164 78.7
Actinidia34361 Actinidia chinensis HOM05D002857 ORTHO05D008347 3.7e-72 275.0 165 77.0
Peaxi162Scf00016g02839 Petunia axillaris HOM05D002857 ORTHO05D008347 3.7e-72 275.0 165 76.4
Nitab4.5_0008075g0040 Nicotiana tabacum HOM05D002857 ORTHO05D008347 4.9e-72 274.6 165 77.6
PGR120G0011 Punica granatum HOM05D002857 ORTHO05D008347 6.3e-72 274.2 165 77.0
PGR142G0748 Punica granatum HOM05D002857 ORTHO05D008347 6.3e-72 274.2 165 77.0
Solyc01g107020.4 Solanum lycopersicum HOM05D002857 ORTHO05D008347 8.3e-72 273.9 165 75.8
Sopen01g049290 Solanum pennellii HOM05D002857 ORTHO05D008347 1.1e-71 273.5 165 75.8
Thecc.02G117000 Theobroma cacao HOM05D002857 ORTHO05D008347 1.1e-71 273.5 158 80.4
MELO3C018011.2 Cucumis melo HOM05D002857 ORTHO05D008347 1.4e-71 273.1 162 77.8
CAN.G606.59 Capsicum annuum HOM05D002857 ORTHO05D008347 2.4e-71 272.3 165 75.2
MSTRG.27764 Avicennia marina HOM05D002857 ORTHO05D008347 4.1e-71 271.6 164 74.4
CANSAT35G0667 Cannabis sativa HOM05D002857 ORTHO05D008347 4.1e-71 271.6 164 76.8
Psat0s3618g0120 Pisum sativum HOM05D002857 ORTHO05D008347 4.1e-71 271.6 162 79.0
Sed0016408 Sechium edule HOM05D002857 ORTHO05D008347 4.1e-71 271.6 162 77.2
Lj4g0011899 Lotus japonicus HOM05D002857 ORTHO05D008347 5.4e-71 271.2 162 76.5
Lalb_Chr06g0165111 Lupinus albus HOM05D002857 ORTHO05D008347 5.4e-71 271.2 161 78.3
Lsat_1_v5_gn_1_103341 Lactuca sativa HOM05D002857 ORTHO05D008347 9.2e-71 270.4 161 78.9
CsaV3_4G000220 Cucumis sativus L. HOM05D002857 ORTHO05D008347 1.2e-70 270.0 161 77.6
Medtr4g109520 Medicago truncatula HOM05D002857 ORTHO05D008347 2.0e-70 269.2 162 77.8
Nitab4.5_0001105g0010 Nicotiana tabacum HOM05D002857 ORTHO05D008347 2.0e-70 269.2 161 77.0
Cc02_g19860 Coffea canephora HOM05D002857 ORTHO05D008347 2.7e-70 268.9 161 75.8
Glyma.17G078200 Glycine max HOM05D002857 ORTHO05D008347 3.5e-70 268.5 162 76.5
Ca_21777_v3 Cicer arietinum L. HOM05D002857 ORTHO05D008347 2.3e-69 265.8 163 76.1
TPR.G2009 Trifolium pratense HOM05D002857 ORTHO05D008347 2.9e-69 265.4 162 76.5
Phvul.003G185000 Phaseolus vulgaris HOM05D002857 ORTHO05D008347 5.0e-69 264.6 161 75.2
Aqoxy6G02637 Aquilegia oxysepala HOM05D002857 ORTHO05D008347 6.6e-69 264.2 162 75.3
DCAR_001699 Daucus carota HOM05D002857 ORTHO05D008347 8.6e-69 263.8 165 73.9
Migut.O00567 Erythranthe guttata HOM05D002857 ORTHO05D008347 1.5e-68 263.1 164 70.7
PSO541G0380 Papaver somniferum HOM05D002857 ORTHO05D008347 1.5e-68 263.1 164 75.6
PGSC0003DMG400025744 Solanum tuberosum HOM05D002857 ORTHO05D008347 1.9e-68 262.7 158 76.6
Migut.N01136 Erythranthe guttata HOM05D002857 ORTHO05D008347 3.3e-68 261.9 164 70.7
Hund00691 Selenicereus undatus HOM05D002857 ORTHO05D008347 2.8e-67 258.8 161 72.7
PSO675G0546 Papaver somniferum HOM05D002857 ORTHO05D008347 3.6e-67 258.5 164 75.6
Rhsim11G0151500 Rhododendron simsii HOM05D002133 ORTHO05D008347 4.7e-67 258.1 156 76.9
Rhsim11G0152900 Rhododendron simsii HOM05D002133 ORTHO05D008347 4.7e-67 258.1 156 76.9
AUR62027003 Chenopodium quinoa HOM05D002857 ORTHO05D008347 1.8e-66 256.1 163 72.4
EL10Ac9g22202 Beta vulgaris HOM05D002857 ORTHO05D008347 2.3e-66 255.8 163 71.8
SGA_v2.0_scaffold219G42527 Striga asiatica HOM05D002857 ORTHO05D008347 4.0e-66 255.0 163 69.3
VMungo1215G1881 Vigna mungo HOM05D002857 ORTHO05D008347 2.6e-65 252.3 154 76.0
FAN24G3287 Fragaria x ananassa HOM05D001904 ORTHO05D008347 9.8e-65 250.4 162 73.5
Nn3g19581 Nelumbo nucifera HOM05D002857 ORTHO05D008347 2.9e-64 248.8 165 73.3
unitig_749.g13509 Utricularia gibba HOM05D002857 ORTHO05D008347 6.4e-64 247.7 160 71.2
SalBow3G3786 Salvia bowleyana HOM05D002857 ORTHO05D008347 8.3e-64 247.3 161 70.8
CDE04G2041 Ceratophyllum demersum HOM05D002857 ORTHO05D008347 2.4e-63 245.7 162 71.6
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 4.7e-59 231.5 161 65.2
A06p03450 Brassica napus HOM05D002857 ORTHO05D008347 4.7e-59 231.5 161 65.2
C06p04760 Brassica napus HOM05D002857 ORTHO05D008347 4.7e-59 231.5 161 65.2
BolC6t35606H Brassica oleracea HOM05D002857 ORTHO05D008347 4.7e-59 231.5 161 65.2
BraA06t23553Z Brassica rapa HOM05D002857 ORTHO05D008347 4.7e-59 231.5 161 65.2
Carub.0001s3918 Capsella rubella HOM05D002857 ORTHO05D008347 4.7e-59 231.5 161 64.6
AL1G57550 Arabidopsis lyrata HOM05D002857 ORTHO05D008347 3.1e-58 228.8 157 65.6
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 3.1e-58 228.8 161 64.6
Thhalv10011799m.g Eutrema salsugineum HOM05D002857 ORTHO05D008347 6.8e-58 227.6 161 63.4
Ah.01g006980 Amaranthus hybridus HOM05D002857 ORTHO05D008347 5.8e-57 224.6 139 74.8
Aa31LG10G4120 Aethionema arabicum HOM05D002857 ORTHO05D008347 1.7e-56 223.0 161 62.7
SpUn0137_0020 Schrenkiella parvula HOM05D002857 ORTHO05D008347 6.4e-56 221.1 161 62.1
HPP92_003268 Vanilla planifolia HOM05D002857 ORTHO05D008347 1.4e-55 219.9 163 62.6
THA.LOC104803442 Tarenaya hassleriana HOM05D002857 ORTHO05D008347 2.7e-54 215.7 163 63.8
Ciclev10007042m.g Citrus clementina HOM05D002857 ORTHO05D008347 1.0e-53 213.8 145 70.3
Os10g0350800 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D008347 3.3e-52 208.8 173 58.4
ECA234G2213 Erigeron canadensis HOM05D002857 ORTHO05D008347 1.2e-51 206.8 126 73.0
Zm00001eb019030 Zea mays HOM05D002857 ORTHO05D008347 4.0e-50 201.8 164 59.1
SMO361G0227 Selaginella moellendorffii HOM05D002857 ORTHO05D008347 7.1e-47 191.0 163 54.6
Oeu010448.1 Olea europaea HOM05D002857 ORTHO05D008347 1.2e-43 180.3 112 76.8
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 1.4e-42 176.8 110 76.4
Glyma.05G021200 Glycine max HOM05D002857 ORTHO05D008347 2.3e-42 176.0 108 77.8
AagrBONN_evm.TU.Sc2ySwM_228.4585 Anthoceros agrestis HOM05D002857 ORTHO05D008347 5.2e-42 174.9 161 52.8
arahy.Tifrunner.gnm1.ann1.9CW0PF Arachis hypogaea HOM05D002857 ORTHO05D008347 1.3e-40 170.2 112 75.0
arahy.Tifrunner.gnm1.ann1.AK2UKD Arachis hypogaea HOM05D002857 ORTHO05D008347 2.9e-40 169.1 109 76.1
arahy.Tifrunner.gnm1.ann1.JJ1SBB Arachis hypogaea HOM05D002857 ORTHO05D008347 2.9e-40 169.1 111 73.9
Ciclev10006219m.g Citrus clementina HOM05D002857 ORTHO05D008347 2.9e-40 169.1 106 77.4
Pp3c5_10320 Physcomitrium patens HOM05D002857 ORTHO05D008347 3.2e-39 165.6 156 51.9
Rhsim11G0151300 Rhododendron simsii HOM05D002133 ORTHO05D002256 7.3e-36 154.5 90 77.8
Mapoly0121s0028 Marchantia polymorpha HOM05D002857 ORTHO05D008347 4.7e-35 151.8 156 46.8
CBR_g3894 Chara braunii HOM05D002857 ORTHO05D008347 2.9e-32 142.5 127 55.9
SEGI_03434 Sequoiadendron giganteum HOM05D002857 ORTHO05D008347 8.1e-27 124.4 113 53.1
MCO12G139 Micromonas commoda HOM05D002857 ORTHO05D008347 5.4e-23 111.7 161 37.9
QL11p030572 Quercus lobata HOM05D002857 ORTHO05D008347 1.6e-22 110.2 54 87.0
Cre05.g247150 Chlamydomonas reinhardtii HOM05D002857 ORTHO05D008347 1.3e-21 107.1 195 29.7
PRCOL_00006372 Prasinoderma coloniale HOM05D002857 ORTHO05D008347 1.3e-19 100.5 160 37.5
Cfa021534 Carpinus fangiana HOM05D002857 ORTHO05D008347 4.8e-19 98.6 59 78.0
AUR62030843 Chenopodium quinoa HOM05D002857 ORTHO05D008347 6.4e-16 88.2 56 67.9
Sc18g0007410 Simmondsia chinensis HOM05D002857 ORTHO05D008347 2.7e-14 82.8 54 66.7
Sc18g0007450 Simmondsia chinensis HOM05D002857 ORTHO05D008347 2.7e-14 82.8 54 66.7
CARHR040040 Cardamine hirsuta HOM05D002857 ORTHO05D008347 4.3e-12 75.5 67 52.2
Nn5g29163 Nelumbo nucifera HOM05D002857 ORTHO05D008347 8.1e-11 71.2 38 84.2
Sabra16G0183400 Salix brachista HOM05D002857 ORTHO05D008347 1.1e-07 60.8 72 48.6


User provided reference genes

Program Settings