Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 2429.4 1304 100.0
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1968.0 1291 82.3
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1949.1 1346 79.3
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1924.8 1340 79.3
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1716.8 1364 68.2
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1711.4 1320 70.1
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1697.2 1262 71.3
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1686.8 1319 68.7
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1681.0 1312 68.8
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1674.4 1318 68.1
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1674.1 1266 69.9
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1671.4 1317 68.4
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1666.4 1315 68.5
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1659.8 1263 69.4
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1656.3 1349 66.3
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1652.5 1237 70.6
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1651.0 1319 67.2
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1644.0 1320 69.0
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1632.1 1319 67.6
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1629.8 1317 66.5
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1626.3 1353 66.6
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1625.5 1322 65.8
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1622.8 1321 67.3
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1622.4 1318 67.7
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1617.1 1324 65.3
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1613.6 1322 65.7
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1612.4 1261 68.8
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1611.7 1237 69.5
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1605.1 1344 65.0
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1604.7 1381 64.4
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1602.4 1326 66.3
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1601.6 1262 67.5
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1599.3 1324 65.8
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1597.8 1240 68.9
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1596.3 1275 67.0
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1590.5 1338 64.3
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1586.6 1278 66.9
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1578.1 1328 65.1
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1576.2 1285 66.5
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1572.8 1278 66.0
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1571.6 1306 65.6
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1567.4 1324 65.0
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1567.4 1327 64.2
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1564.3 1212 68.1
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1556.6 1320 64.0
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1553.5 1331 63.9
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1550.0 1314 64.2
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1547.7 1324 63.5
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1546.9 1291 63.7
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1544.3 1328 62.9
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1532.3 1277 64.1
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1530.0 1321 62.8
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1526.9 1252 64.4
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1525.8 1312 64.3
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1515.0 1315 63.7
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1512.3 1325 61.6
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1507.3 1282 63.5
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1497.6 1340 62.0
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1479.2 1322 61.1
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1473.8 1336 61.9
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1463.4 1317 61.0
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1463.0 1330 60.4
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1460.7 1328 61.3
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1459.9 1313 60.8
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1459.5 1254 63.1
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1456.0 1328 61.1
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1452.2 1342 58.9
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1450.3 1300 60.9
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1449.5 1265 62.1
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1442.9 1321 59.7
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1442.2 1330 59.8
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1441.8 1350 59.8
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1435.6 1223 62.8
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1434.9 1359 59.9
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1422.9 1317 59.7
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1416.4 1397 58.5
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1415.2 1286 59.8
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1414.8 1340 58.7
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1410.6 1253 60.3
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1409.8 1282 59.8
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1404.8 1230 61.7
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1402.5 1224 61.9
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1402.5 1224 61.9
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1397.5 1344 57.5
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1394.4 1345 58.2
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1390.2 1261 60.3
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1389.0 1347 57.5
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1386.3 1225 61.2
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1378.2 1343 58.7
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1365.5 1282 58.8
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1349.0 1112 64.6
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1334.7 1341 56.5
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1282.7 1284 55.8
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1268.1 1267 56.3
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1251.1 1267 54.3
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1246.9 1276 55.3
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1246.1 1206 56.6
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1223.4 981 67.7
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1216.1 1275 54.7
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1201.4 1263 53.6
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1181.8 1145 59.5
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1163.3 1359 50.6
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 0.0e+00 1159.4 1258 52.9
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1158.3 1307 50.4
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 0.0e+00 1092.4 756 75.5
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 0.0e+00 1091.3 1298 49.3
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 5.0e-305 1051.6 1269 48.1
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 9.8e-293 1010.7 1240 48.3
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 2.5e-280 969.5 1327 46.3
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 5.4e-275 951.8 698 72.8
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 1.2e-226 791.2 1135 43.1
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 2.6e-192 677.2 429 78.1
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 1.6e-186 657.9 572 66.1
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 1.4e-166 591.7 849 46.6
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 1.2e-165 588.6 574 59.4
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 3.6e-162 577.0 483 65.2
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.7e-151 541.6 1277 33.0
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 1.4e-150 538.5 704 49.1
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 9.2e-150 535.8 611 50.9
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.1e-147 528.9 1231 33.2
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 3.3e-147 527.3 1235 33.4
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.8e-145 521.5 1266 32.3
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 6.6e-132 476.5 1189 32.0
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 4.6e-125 453.8 1298 30.2
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 5.1e-116 423.7 1080 32.7
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 2.2e-106 391.7 1076 31.9
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 1.8e-92 345.5 1223 26.1
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 5.3e-89 334.0 329 55.0
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 7.5e-83 313.5 247 66.8
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 7.7e-80 303.5 580 37.6
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.6e-77 295.8 580 37.6
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 2.1e-45 189.1 1234 25.0
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.1e-45 189.1 217 50.7
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.7e-34 152.9 348 31.6
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 1.6e-29 136.3 105 66.7
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.8e-29 135.6 129 53.5
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 6.2e-29 134.4 514 25.3
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 2.4e-28 132.5 159 45.9
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 2.0e-27 129.4 188 42.6
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 3.9e-23 115.2 172 44.8
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.1e-21 109.4 121 50.4
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 4.0e-20 105.1 112 58.9
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 1.9e-17 96.3 73 60.3
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 3.2e-17 95.5 191 35.1
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 1.2e-16 93.6 73 60.3
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 3.5e-16 92.0 61 75.4
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 4.6e-16 91.7 72 58.3
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 5.6e-14 84.7 71 53.5
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 9.6e-14 84.0 61 70.5
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 9.6e-14 84.0 61 70.5
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 2.6e-11 75.9 84 40.5
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 4.2e-09 68.6 41 85.4
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.6e-08 66.6 141 34.8
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 1.0e-07 63.9 76 47.4
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 3.9e-07 62.0 51 58.8
Cfa025397 Carpinus fangiana HOM05D004672 ORTHO05D126383 3.3e-06 58.9 502 23.9
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 5.6e-06 58.2 85 42.4
Glyma.07G215100 Glycine max HOM05D005611 ORTHO05D006852 5.6e-06 58.2 38 73.7


User provided reference genes

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