Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 2.0e-250 868.6 427 100.0
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 3.9e-214 748.0 456 82.7
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 5.4e-208 727.6 455 80.9
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 4.4e-202 708.0 457 79.4
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 2.9e-201 705.3 457 79.6
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 1.4e-200 703.0 458 78.2
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 1.6e-199 699.5 457 77.9
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 3.5e-199 698.4 457 79.2
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 7.8e-199 697.2 458 78.4
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 5.1e-198 694.5 457 77.2
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 6.6e-198 694.1 457 77.5
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 6.6e-198 694.1 457 77.7
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 6.6e-198 694.1 457 77.7
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.5e-197 693.0 457 77.7
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 9.6e-197 690.3 457 75.9
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 9.6e-197 690.3 457 76.6
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.8e-196 688.7 457 76.4
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 3.6e-196 688.3 457 77.0
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 3.6e-196 688.3 457 77.7
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 1.8e-195 686.0 457 77.7
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.4e-195 685.6 457 76.1
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 4.0e-195 684.9 457 75.7
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 4.0e-195 684.9 458 76.6
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 9.9e-194 680.2 456 75.9
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 9.9e-194 680.2 457 75.9
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 1.3e-193 679.9 457 75.5
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 2.2e-193 679.1 458 76.9
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 6.4e-193 677.6 457 75.3
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 6.4e-193 677.6 457 74.4
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 4.2e-192 674.9 447 75.6
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.3e-190 669.8 456 73.2
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 3.0e-190 668.7 457 74.0
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 5.1e-190 667.9 463 73.2
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 9.6e-189 663.7 456 73.9
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 1.6e-188 662.9 447 73.8
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 2.8e-188 662.1 441 77.1
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.7e-188 661.8 456 73.7
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 8.1e-188 660.6 456 73.7
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 8.1e-188 660.6 458 73.1
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 8.1e-188 660.6 458 73.8
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 1.8e-187 659.4 456 74.8
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 9.0e-187 657.1 456 73.5
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 1.5e-186 656.4 480 69.8
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 2.0e-186 656.0 450 75.1
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 2.0e-186 656.0 440 74.1
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 5.8e-186 654.4 456 74.1
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 2.2e-185 652.5 447 74.7
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 2.2e-185 652.5 462 72.3
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 2.9e-185 652.1 457 74.2
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.4e-184 649.8 458 71.8
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 2.4e-184 649.0 447 73.4
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 4.2e-184 648.3 443 74.9
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 2.7e-183 645.6 455 73.0
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 6.0e-183 644.4 443 74.3
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 7.9e-183 644.0 446 74.4
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 1.3e-182 643.3 443 74.3
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 1.3e-182 643.3 443 74.3
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 3.0e-182 642.1 443 74.0
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 3.0e-182 642.1 457 72.9
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 6.7e-182 641.0 457 71.8
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 8.7e-182 640.6 458 72.5
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 8.7e-182 640.6 443 73.8
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 1.5e-181 639.8 443 73.8
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 1.9e-181 639.4 444 74.5
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 2.5e-181 639.0 442 73.3
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 2.5e-181 639.0 442 73.3
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 4.3e-181 638.3 458 71.2
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 5.6e-181 637.9 458 72.9
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 9.6e-181 637.1 447 71.8
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 2.8e-180 635.6 445 73.5
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 2.8e-180 635.6 457 71.6
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 3.7e-180 635.2 463 72.1
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 3.7e-180 635.2 445 73.0
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 4.8e-180 634.8 471 71.1
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 1.4e-179 633.3 472 71.4
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 1.4e-179 633.3 471 71.3
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 4.0e-179 631.7 425 74.1
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 4.0e-179 631.7 471 70.3
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 6.9e-179 630.9 448 72.8
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 1.2e-178 630.2 441 74.4
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 4.5e-178 628.2 457 70.2
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 5.8e-178 627.9 450 70.7
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 3.8e-177 625.2 471 70.7
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 8.4e-177 624.0 471 70.5
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 1.1e-176 623.6 430 73.5
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 1.4e-176 623.2 461 71.4
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 5.5e-176 621.3 471 69.2
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 7.1e-176 620.9 447 72.3
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 7.1e-176 620.9 471 69.2
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 2.1e-175 619.4 458 71.2
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 1.3e-174 616.7 393 78.6
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 1.3e-174 616.7 448 69.4
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 2.3e-174 615.9 457 69.8
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 5.1e-174 614.8 444 70.3
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 5.1e-174 614.8 444 70.3
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 6.7e-174 614.4 445 70.8
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 3.3e-173 612.1 448 69.9
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 1.6e-172 609.8 458 69.0
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.6e-172 609.8 457 69.4
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.1e-171 607.1 407 73.0
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.6e-170 602.4 453 68.4
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 3.8e-169 598.6 457 68.5
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 6.5e-169 597.8 568 58.8
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 9.4e-168 594.0 425 72.7
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 9.4e-168 594.0 447 69.6
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 9.4e-168 594.0 472 65.5
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.9e-165 586.3 458 66.2
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 4.3e-165 585.1 440 66.6
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 4.3e-165 585.1 372 76.6
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 4.3e-165 585.1 435 69.0
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 7.4e-165 584.3 435 69.2
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 2.2e-164 582.8 389 73.0
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 4.5e-162 575.1 434 69.6
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 5.0e-161 571.6 435 67.6
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 1.6e-159 566.6 458 64.8
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.7e-159 565.8 421 68.4
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 1.7e-156 556.6 363 73.3
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 4.8e-156 555.1 471 62.0
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 8.2e-156 554.3 363 76.0
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 8.5e-153 544.3 447 64.0
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 5.2e-150 535.0 372 70.4
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 7.7e-146 521.2 425 64.5
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 3.8e-145 518.8 357 71.4
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.5e-144 516.9 393 69.2
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 8.2e-140 501.1 376 65.2
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 8.8e-134 481.1 378 64.3
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 2.0e-133 479.9 369 65.3
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 4.8e-132 475.3 351 68.7
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 5.5e-128 461.8 409 60.1
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 6.1e-127 458.4 322 71.4
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.1e-127 458.4 445 55.7
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 4.1e-123 445.7 404 57.4
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.4e-115 420.6 457 53.4
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 4.4e-109 399.1 304 65.8
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 9.9e-93 344.7 256 69.9
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 9.9e-93 344.7 336 58.6
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 3.6e-79 299.7 208 76.9
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 9.0e-78 295.0 193 73.6
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 1.6e-74 284.3 401 43.9
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 1.9e-72 277.3 212 71.2
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 1.2e-58 231.5 198 63.6
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 7.7e-53 212.2 175 66.9
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 1.6e-42 177.9 123 77.2
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 3.5e-37 160.2 205 47.8
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 7.2e-35 152.5 139 61.2
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 7.4e-32 142.5 138 55.1
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 9.1e-30 135.6 137 56.2
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 1.1e-22 112.1 61 91.8
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.0e-12 79.0 56 66.1


User provided reference genes

Program Settings