Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 2.8e-204 715.3 426 100.0
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 2.2e-148 529.6 350 78.6
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 5.9e-138 495.0 361 74.0
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 1.9e-120 436.8 426 63.4
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 1.2e-119 434.1 356 65.2
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 1.7e-116 423.7 425 61.2
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 4.1e-115 419.1 431 60.6
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 9.2e-115 417.9 406 64.5
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 4.5e-114 415.6 425 60.7
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 8.6e-113 411.4 432 60.6
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 1.6e-111 407.1 423 59.6
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 1.0e-110 404.4 355 63.7
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 2.0e-109 400.2 431 58.2
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 2.0e-109 400.2 422 59.0
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 2.6e-109 399.8 422 59.2
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 3.4e-109 399.4 427 59.5
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.3e-108 397.5 431 57.8
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 2.2e-108 396.7 347 64.3
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 3.7e-108 396.0 427 58.8
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 2.4e-107 393.3 439 59.7
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 4.1e-107 392.5 431 56.6
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 4.1e-107 392.5 427 58.5
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 4.1e-107 392.5 421 58.7
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 5.4e-107 392.1 360 60.8
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 2.0e-106 390.2 431 58.2
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 2.7e-106 389.8 444 62.6
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 3.5e-106 389.4 422 58.3
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 1.3e-105 387.5 427 57.1
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 1.7e-105 387.1 426 58.7
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 2.3e-105 386.7 426 58.5
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 5.0e-105 385.6 426 57.5
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 8.6e-105 384.8 424 57.5
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 3.6e-103 379.4 360 59.4
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 2.3e-102 376.7 426 58.2
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 8.9e-102 374.8 360 58.6
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 3.4e-101 372.9 432 57.4
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 3.4e-101 372.9 435 57.0
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 2.1e-98 363.6 358 56.7
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 2.7e-98 363.2 429 56.6
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 7.8e-98 361.7 331 59.8
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 4.3e-96 355.9 356 63.2
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 5.6e-96 355.5 330 58.8
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 1.8e-94 350.5 387 53.7
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 1.7e-92 344.0 416 53.6
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 7.1e-91 338.6 427 54.6
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 2.7e-90 336.7 340 58.2
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 4.6e-90 335.9 348 54.0
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 4.6e-90 335.9 427 54.3
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 1.0e-89 334.7 427 54.8
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 3.0e-89 333.2 317 58.4
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 5.1e-89 332.4 431 52.7
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 1.9e-88 330.5 431 53.8
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 2.8e-87 326.6 422 52.1
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 2.4e-86 323.6 313 59.1
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 6.8e-86 322.0 421 53.2
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 6.8e-86 322.0 358 55.3
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 5.8e-85 318.9 427 51.3
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 1.7e-84 317.4 256 68.0
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 6.4e-84 315.5 473 48.0
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 1.1e-83 314.7 422 52.1
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 1.4e-83 314.3 534 46.1
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 2.4e-83 313.5 334 55.4
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 5.4e-83 312.4 473 46.7
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 3.9e-81 306.2 467 48.6
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 1.1e-80 304.7 253 65.2
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 3.3e-80 303.1 341 51.9
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 1.2e-79 301.2 363 51.0
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 6.9e-78 295.4 380 53.4
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 2.6e-77 293.5 379 46.7
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 4.2e-75 286.2 264 59.5
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 1.2e-74 284.6 345 49.6
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 1.0e-73 281.6 329 53.2
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 1.7e-73 280.8 421 50.1
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 5.1e-73 279.3 415 49.9
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 3.3e-72 276.6 296 55.1
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 3.1e-70 270.0 229 65.1
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 1.5e-69 267.7 242 62.4
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 2.6e-69 266.9 271 54.6
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 2.9e-68 263.5 389 46.0
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 6.4e-68 262.3 387 48.8
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 8.4e-68 261.9 348 50.0
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 1.9e-67 260.8 300 52.0
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 7.1e-67 258.8 300 51.3
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 1.2e-66 258.1 351 46.7
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 1.6e-66 257.7 300 51.3
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.6e-66 257.7 277 59.2
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 1.6e-66 257.7 305 51.8
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 2.7e-66 256.9 300 51.3
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 3.9e-65 253.1 242 57.4
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.5e-64 250.4 425 48.9
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 4.3e-64 249.6 317 46.7
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.3e-63 248.1 272 57.4
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 1.3e-63 248.1 254 57.1
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 1.6e-63 247.7 425 48.2
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.1e-62 245.0 426 47.9
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 5.3e-62 242.7 236 58.9
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 5.3e-62 242.7 351 44.4
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 1.2e-61 241.5 303 48.2
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 1.2e-61 241.5 331 49.8
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 1.5e-61 241.1 354 44.1
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 1.3e-60 238.0 271 51.3
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 2.9e-60 236.9 260 56.2
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 8.4e-60 235.3 268 52.6
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 2.1e-58 230.7 238 58.0
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 2.3e-57 227.3 241 56.8
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 8.7e-57 225.3 275 48.7
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 3.3e-56 223.4 275 51.3
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 4.3e-56 223.0 264 54.5
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 2.8e-55 220.3 241 55.2
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 8.2e-55 218.8 212 58.5
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 4.9e-52 209.5 216 53.2
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 1.4e-51 208.0 262 46.2
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 1.0e-49 201.8 327 40.1
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 6.3e-47 192.6 359 37.9
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 4.6e-42 176.4 252 40.9
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 6.7e-41 172.6 314 44.9
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 2.0e-40 171.0 236 46.2
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 5.7e-40 169.5 350 34.9
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 2.2e-39 167.5 247 42.1
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 3.4e-37 160.2 149 56.4
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 7.7e-29 132.5 154 51.9
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.5e-27 127.5 236 43.6
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.6e-21 108.2 211 41.7
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 2.0e-21 107.8 88 60.2
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 3.2e-19 100.5 141 49.6
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 4.2e-19 100.1 72 75.0
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 4.2e-19 100.1 78 74.4
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.0e-17 94.0 91 62.6
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 5.2e-17 93.2 103 50.5
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 2.0e-13 81.3 180 28.9
CDE10G1193 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 9.4e-11 72.4 87 56.3
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 2.7e-10 70.9 105 40.0
BcaC05g24776 Brassica carinata HOM05D004981 ORTHO05D005635 4.7e-10 70.1 50 64.0
VMungo1383G0650 Vigna mungo HOM05D004981 ORTHO05D005635 2.3e-09 67.8 152 35.5
BraA08t32917Z Brassica rapa HOM05D004981 ORTHO05D005635 5.2e-09 66.6 98 45.9
BolC7t41892H Brassica oleracea HOM05D004981 ORTHO05D042093 6.8e-09 66.2 95 46.3
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.6e-08 64.3 134 35.1
BolC5t29476H Brassica oleracea HOM05D004981 ORTHO05D005635 3.4e-08 63.9 43 67.4
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 5.7e-08 63.2 68 48.5
Lsat_1_v5_gn_5_14961 Lactuca sativa HOM05D004981 ORTHO05D005635 1.3e-07 62.0 137 38.7
Lsat_1_v5_gn_4_93920 Lactuca sativa HOM05D004981 ORTHO05D005635 4.9e-07 60.1 99 41.4
Cre04.g221350 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 1.1e-06 58.9 192 31.8
CDE10G0753 Ceratophyllum demersum HOM05D000867 ORTHO05D000864 7.0e-06 56.2 74 47.3


User provided reference genes

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