Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 3.0e-221 771.5 388 100.0
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 6.1e-182 641.0 387 84.0
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.7e-166 588.2 404 76.0
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 3.9e-165 585.1 527 63.0
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.2e-163 579.3 416 73.8
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 2.6e-161 572.4 408 74.0
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.0e-160 570.5 406 73.6
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 6.5e-160 567.8 386 75.1
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 5.5e-159 564.7 400 73.8
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 5.5e-159 564.7 388 74.7
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.6e-158 562.0 411 73.0
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 3.6e-158 562.0 396 74.7
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 1.8e-157 559.7 379 75.5
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 3.0e-157 558.9 375 76.3
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 6.7e-157 557.8 369 78.3
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 8.8e-157 557.4 335 82.7
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 1.2e-156 557.0 421 69.6
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 6.3e-155 551.2 384 72.9
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 6.3e-155 551.2 419 71.1
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 1.1e-154 550.4 399 71.4
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.1e-154 550.4 396 72.2
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 1.1e-154 550.4 368 76.1
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 1.4e-154 550.1 401 71.8
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 1.4e-154 550.1 415 70.4
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 2.4e-154 549.3 398 72.4
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 3.1e-154 548.9 409 70.9
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 1.2e-153 547.0 400 71.5
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 7.7e-153 544.3 387 71.6
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 1.0e-152 543.9 388 74.0
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 2.9e-152 542.3 351 78.1
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 5.0e-152 541.6 400 70.8
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 6.5e-152 541.2 400 70.8
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 1.1e-151 540.4 418 70.3
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 1.5e-151 540.0 331 82.2
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 1.9e-151 539.7 431 68.0
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 1.9e-151 539.7 406 70.2
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 2.5e-151 539.3 402 70.4
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.6e-150 536.6 341 78.3
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 2.7e-150 535.8 406 69.7
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 3.6e-150 535.4 401 70.6
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 3.6e-150 535.4 406 69.7
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 3.6e-150 535.4 328 80.5
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 1.8e-149 533.1 385 73.2
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 5.2e-149 531.6 393 70.5
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 1.2e-148 530.4 408 69.4
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 1.3e-147 526.9 400 70.0
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 8.3e-147 524.2 324 79.3
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 8.3e-147 524.2 388 71.4
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 3.1e-146 522.3 346 76.9
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 3.1e-146 522.3 342 78.1
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 3.1e-146 522.3 342 78.1
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 1.1e-143 513.8 350 74.9
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 1.5e-143 513.5 348 75.3
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 1.9e-143 513.1 349 74.5
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 6.1e-142 508.1 387 66.4
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 2.3e-141 506.1 408 66.2
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 4.0e-141 505.4 349 72.8
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 4.9e-139 498.4 415 63.6
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 1.1e-138 497.3 349 71.6
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 2.4e-138 496.1 366 68.9
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 5.4e-138 495.0 353 69.1
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 7.0e-138 494.6 358 70.1
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 3.5e-137 492.3 346 72.3
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 5.9e-137 491.5 358 68.2
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 3.8e-136 488.8 524 55.2
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 5.0e-136 488.4 356 68.3
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 6.6e-136 488.0 410 64.9
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 8.6e-136 487.6 342 71.3
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 8.6e-136 487.6 342 71.9
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 1.1e-135 487.3 358 70.1
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 1.1e-135 487.3 300 80.0
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 4.3e-135 485.3 343 70.3
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 4.3e-135 485.3 343 70.3
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 9.5e-135 484.2 362 69.1
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 9.5e-135 484.2 324 71.9
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 9.5e-135 484.2 396 65.4
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 2.1e-134 483.0 358 67.6
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 2.8e-134 482.6 357 69.2
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 3.6e-134 482.3 324 73.1
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 4.7e-134 481.9 334 73.4
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 3.1e-133 479.2 343 68.2
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 1.3e-131 473.8 323 72.8
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 1.1e-130 470.7 404 62.6
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 4.1e-130 468.8 455 59.3
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 2.7e-129 466.1 352 67.0
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 7.8e-129 464.5 352 66.8
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 7.8e-129 464.5 356 66.6
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 1.3e-128 463.8 354 66.1
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 1.3e-128 463.8 354 66.1
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 1.7e-128 463.4 362 64.9
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 3.0e-128 462.6 354 64.7
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 3.3e-127 459.1 354 65.0
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 1.1e-125 454.1 346 65.3
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 8.9e-125 451.1 403 61.5
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 1.7e-123 446.8 378 63.5
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 8.3e-123 444.5 338 66.0
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 5.4e-122 441.8 387 59.7
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 4.6e-121 438.7 398 61.6
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 1.6e-118 430.3 371 62.5
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 8.1e-118 427.9 390 57.2
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 1.2e-116 424.1 308 70.1
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 4.4e-116 422.2 325 69.8
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 5.1e-112 408.7 296 69.6
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 5.1e-112 408.7 290 68.6
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.1e-111 407.5 300 67.3
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 4.7e-110 402.1 213 90.1
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 1.8e-109 400.2 224 86.2
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 5.4e-106 388.7 224 82.1
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 9.6e-103 377.9 289 71.6
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 1.3e-102 377.5 268 68.3
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 6.4e-99 365.2 575 41.6
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 5.4e-98 362.1 258 66.7
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 1.7e-96 357.1 266 69.5
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 3.9e-96 355.9 302 59.9
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 6.6e-96 355.1 279 68.8
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 9.6e-95 351.3 235 78.3
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 1.1e-93 347.8 300 66.7
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 3.8e-91 339.3 200 81.0
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.0e-84 317.0 215 72.6
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 2.0e-84 317.0 215 70.7
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 3.8e-83 312.8 328 55.8
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.2e-82 309.3 268 57.5
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 3.8e-75 286.2 239 60.7
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 2.3e-40 170.6 246 37.4
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 4.0e-40 169.9 254 38.6
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 2.2e-30 137.5 286 33.6
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.2e-28 131.7 119 58.0
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 1.0e-27 128.6 115 62.6
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 5.5e-26 122.9 109 63.3
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 2.1e-25 120.9 247 34.8
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.8e-25 120.6 143 49.0
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 4.7e-25 119.8 115 56.5
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 6.1e-25 119.4 130 52.3
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.1e-25 119.4 78 75.6
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 8.0e-25 119.0 116 56.0
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.0e-23 114.4 66 83.3
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.0e-23 114.4 66 83.3
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.3e-22 111.7 66 78.8
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.3e-22 111.7 66 78.8
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.1e-21 108.6 88 64.8
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.4e-21 107.5 66 75.8
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 4.4e-15 86.7 49 87.8
MCO09G146 Micromonas commoda HOM05D004930 ORTHO05D270306 6.4e-14 82.8 260 27.3
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 8.3e-14 82.4 166 31.3
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 2.4e-13 80.9 170 36.5
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 7.8e-12 75.9 157 31.8
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 4.7e-09 66.6 170 30.0
CARHR054100 Cardamine hirsuta HOM05D004930 ORTHO05D006531 6.4e-06 56.2 68 50.0


User provided reference genes

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