Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G148300 Carya illinoinensis HOM05D003483 ORTHO05D004101 5.8e-118 427.6 214 100.0
QL02p098403 Quercus lobata HOM05D003483 ORTHO05D004101 6.3e-88 327.8 211 80.1
Cfa005534 Carpinus fangiana HOM05D003483 ORTHO05D004101 1.0e-82 310.5 209 78.5
TAR376G1167 Trochodendron aralioides HOM05D003483 ORTHO05D004101 4.2e-68 261.9 212 65.6
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 9.4e-68 260.8 157 80.3
Glyma.08G185000 Glycine max HOM05D003483 ORTHO05D004101 2.1e-67 259.6 209 67.5
Phvul.006G213100 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 2.3e-66 256.1 148 83.8
Glyma.15G047700 Glycine max HOM05D003483 ORTHO05D004101 4.0e-66 255.4 209 67.5
GSVIVG01022998001 Vitis vinifera HOM05D003483 ORTHO05D004101 5.2e-66 255.0 156 80.1
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 6.7e-66 254.6 171 77.8
COL.COLO4_17881 Corchorus olitorius HOM05D003483 ORTHO05D004101 1.5e-65 253.4 144 83.3
Manes.07G014500 Manihot esculenta HOM05D003483 ORTHO05D004101 2.6e-65 252.7 185 69.7
Duzib248G1166 Durio zibethinus HOM05D003483 ORTHO05D004101 1.3e-64 250.4 152 79.6
Hma1.2p1_0217F.1_g091970 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 2.4e-63 246.1 211 62.6
Peaxi162Scf00011g00242 Petunia axillaris HOM05D003483 ORTHO05D004101 1.6e-62 243.4 166 72.3
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 1.6e-62 243.4 201 63.7
Medtr2g007640 Medicago truncatula HOM05D003483 ORTHO05D004101 2.0e-62 243.0 199 65.3
Gohir.A04G126900 Gossypium hirsutum HOM05D003483 ORTHO05D004101 2.7e-62 242.7 150 78.7
CSS0026849 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 3.5e-62 242.3 168 70.2
Eucgr.I02715 Eucalyptus grandis HOM05D003483 ORTHO05D004101 1.3e-61 240.4 143 83.2
Gorai.012G160700 Gossypium raimondii HOM05D003483 ORTHO05D004101 1.7e-61 240.0 150 77.3
Psat1g224320 Pisum sativum HOM05D003483 ORTHO05D004101 1.7e-61 240.0 200 63.5
Dinv24264 Davidia involucrata HOM05D003483 ORTHO05D004101 2.2e-61 239.6 200 63.5
Thecc.02G039900 Theobroma cacao HOM05D003483 ORTHO05D004101 8.5e-61 237.7 206 62.6
Lj6g0022843 Lotus japonicus HOM05D003483 ORTHO05D004101 1.1e-60 237.3 149 77.9
arahy.Tifrunner.gnm1.ann1.G5V2PN Arachis hypogaea HOM05D003483 ORTHO05D004101 1.5e-60 236.9 158 76.6
CSS0038053 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 2.5e-60 236.1 192 65.6
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 4.2e-60 235.3 164 73.8
PGR142G0005 Punica granatum HOM05D003483 ORTHO05D004101 1.2e-59 233.8 144 79.9
Cc02_g22350 Coffea canephora HOM05D003483 ORTHO05D004101 1.6e-59 233.4 191 66.0
Nitab4.5_0002245g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 1.6e-59 233.4 166 69.9
PGR142G1721 Punica granatum HOM05D003483 ORTHO05D004101 1.6e-59 233.4 198 63.6
Nitab4.5_0003819g0040 Nicotiana tabacum HOM05D003483 ORTHO05D004101 2.7e-59 232.6 166 68.7
MBI03_g28296_MAGBIO Magnolia biondii HOM05D003483 ORTHO05D004101 1.4e-58 230.3 209 60.3
Rhsim11G0130100 Rhododendron simsii HOM05D003483 ORTHO05D004101 1.4e-58 230.3 195 61.5
Hma1.2p1_0557F.1_g178380 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 2.3e-58 229.6 211 60.2
vmacro01768 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 5.2e-58 228.4 198 63.6
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 8.8e-58 227.6 207 60.4
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 1.2e-57 227.3 144 76.4
COL.COLO4_17880 Corchorus olitorius HOM05D003483 ORTHO05D004101 1.5e-57 226.9 200 62.5
Prupe.1G566700 Prunus persica HOM05D003483 ORTHO05D004101 1.5e-57 226.9 200 61.5
arahy.Tifrunner.gnm1.ann1.MUYK2J Arachis hypogaea HOM05D003483 ORTHO05D004101 2.0e-57 226.5 196 62.2
CSS0036812 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 2.0e-57 226.5 206 61.2
Haze_01644 Corylus avellana HOM05D003483 ORTHO05D004101 2.6e-57 226.1 144 75.7
Manes.07G014600 Manihot esculenta HOM05D003483 ORTHO05D004101 2.6e-57 226.1 151 74.2
Cpa.g.sc2.4 Carica papaya HOM05D003483 ORTHO05D004101 3.4e-57 225.7 199 59.3
Atru.chr6.836 Acer truncatum HOM05D003483 ORTHO05D004101 4.4e-57 225.3 187 64.7
CiPaw.05G043400 Carya illinoinensis HOM05D003483 ORTHO05D004101 4.4e-57 225.3 208 57.7
Dinv19357 Davidia involucrata HOM05D003483 ORTHO05D004101 7.5e-57 224.6 188 63.3
Eucgr.I02716 Eucalyptus grandis HOM05D003483 ORTHO05D004101 1.3e-56 223.8 196 62.8
PGSC0003DMG400023753 Solanum tuberosum HOM05D003483 ORTHO05D004101 1.7e-56 223.4 143 76.2
Gorai.002G209300 Gossypium raimondii HOM05D003483 ORTHO05D004101 2.2e-56 223.0 209 58.9
Gohir.D01G168600 Gossypium hirsutum HOM05D003483 ORTHO05D004101 4.8e-56 221.9 209 58.9
RcHm_v2.0_Chr7g0222941 Rosa chinensis HOM05D003483 ORTHO05D004101 6.3e-56 221.5 211 60.2
CANSAT11G2084 Cannabis sativa HOM05D003483 ORTHO05D004101 8.3e-56 221.1 195 61.5
CAN.G1577.5 Capsicum annuum HOM05D003483 ORTHO05D004101 8.3e-56 221.1 152 72.4
Thecc.02G039800 Theobroma cacao HOM05D003483 ORTHO05D004101 1.4e-55 220.3 208 58.2
Sabra01G0161900 Salix brachista HOM05D003483 ORTHO05D004101 2.4e-55 219.5 199 59.3
TAR381G1595 Trochodendron aralioides HOM05D003483 ORTHO05D004101 2.4e-55 219.5 176 62.5
Actinidia39049 Actinidia chinensis HOM05D003483 ORTHO05D004101 3.1e-55 219.2 167 67.1
MSTRG.5236 Avicennia marina HOM05D003483 ORTHO05D004101 3.1e-55 219.2 144 75.0
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 3.1e-55 219.2 145 73.8
Gohir.A01G177800 Gossypium hirsutum HOM05D003483 ORTHO05D004101 3.1e-55 219.2 144 73.6
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 4.1e-55 218.8 212 55.2
Ca_00080_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 7.0e-55 218.0 143 75.5
MD15G1421500 Malus domestica HOM05D003483 ORTHO05D004101 7.0e-55 218.0 208 58.7
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 1.6e-54 216.9 175 66.3
FvH4_5g29660 Fragaria vesca HOM05D003483 ORTHO05D004101 2.0e-54 216.5 171 65.5
QL02p098396 Quercus lobata HOM05D003483 ORTHO05D004101 2.0e-54 216.5 154 70.8
Sc06g0009790 Simmondsia chinensis HOM05D003483 ORTHO05D004101 2.7e-54 216.1 141 75.2
FAN18G3047 Fragaria x ananassa HOM05D003483 ORTHO05D004101 4.5e-54 215.3 171 65.5
Gohir.D04G171800 Gossypium hirsutum HOM05D003483 ORTHO05D004101 4.5e-54 215.3 142 74.6
HanXRQChr03g0066831 Helianthus annuus HOM05D003483 ORTHO05D004101 4.5e-54 215.3 145 73.8
TPR.G2131 Trifolium pratense HOM05D003483 ORTHO05D004101 5.9e-54 214.9 205 58.0
Cc02_g22380 Coffea canephora HOM05D003483 ORTHO05D004101 1.0e-53 214.2 215 58.1
Haze_01640 Corylus avellana HOM05D003483 ORTHO05D004101 1.7e-53 213.4 153 75.8
Nn1g08897 Nelumbo nucifera HOM05D003483 ORTHO05D004101 1.7e-53 213.4 208 58.2
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 2.9e-53 212.6 144 70.8
Cpa.g.sc2.3 Carica papaya HOM05D003483 ORTHO05D004101 3.8e-53 212.2 144 72.9
FAN13G0976 Fragaria x ananassa HOM05D003483 ORTHO05D004101 3.8e-53 212.2 193 60.1
TWI59G0966 Tripterygium wilfordii HOM05D003483 ORTHO05D004101 5.0e-53 211.8 202 59.9
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 5.0e-53 211.8 226 54.9
Haze_01645 Corylus avellana HOM05D003483 ORTHO05D004101 6.5e-53 211.5 153 75.8
Ah.01g002720 Amaranthus hybridus HOM05D003483 ORTHO05D004101 8.5e-53 211.1 197 58.4
Glyma.08G185800 Glycine max HOM05D003483 ORTHO05D004101 8.5e-53 211.1 171 66.1
Glyma.15G047000 Glycine max HOM05D003483 ORTHO05D004101 1.5e-52 210.3 144 70.8
Nn1g08607 Nelumbo nucifera HOM05D003483 ORTHO05D004101 1.5e-52 210.3 168 66.1
MELO3C010097.2 Cucumis melo HOM05D003483 ORTHO05D004101 1.9e-52 209.9 159 67.3
SalBow6G5560 Salvia bowleyana HOM05D003483 ORTHO05D004101 1.9e-52 209.9 192 56.2
SalBow6G7247 Salvia bowleyana HOM05D003483 ORTHO05D004101 1.9e-52 209.9 189 56.6
Sed0016447 Sechium edule HOM05D003483 ORTHO05D004101 2.5e-52 209.5 175 63.4
vmacro19900 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 2.5e-52 209.5 217 52.5
Aqoxy5G02410 Aquilegia oxysepala HOM05D003483 ORTHO05D004101 3.2e-52 209.1 160 64.4
Lsat_1_v5_gn_9_118240 Lactuca sativa HOM05D003483 ORTHO05D004101 3.2e-52 209.1 175 63.4
CsaV3_1G045010 Cucumis sativus L. HOM05D003483 ORTHO05D004101 4.2e-52 208.8 159 67.3
EL10Ac9g22715 Beta vulgaris HOM05D003483 ORTHO05D004101 5.5e-52 208.4 143 71.3
Sabra03G0012000 Salix brachista HOM05D003483 ORTHO05D004101 5.5e-52 208.4 254 49.2
HanXRQChr06g0185051 Helianthus annuus HOM05D003483 ORTHO05D004101 7.2e-52 208.0 188 60.1
AUR62015054 Chenopodium quinoa HOM05D003483 ORTHO05D004101 3.6e-51 205.7 145 70.3
ECA240G0807 Erigeron canadensis HOM05D003483 ORTHO05D004101 4.7e-51 205.3 128 75.8
Potri.001G209600 Populus trichocarpa HOM05D003483 ORTHO05D004101 4.7e-51 205.3 208 56.7
SGA_v2.0_scaffold145G36069 Striga asiatica HOM05D003483 ORTHO05D004101 4.7e-51 205.3 210 55.7
VMungo0540G0086 Vigna mungo HOM05D003483 ORTHO05D004101 4.7e-51 205.3 180 62.8
Cfa005532 Carpinus fangiana HOM05D003483 ORTHO05D004101 6.1e-51 204.9 201 57.2
Os03g0704100 Oryza sativa ssp. japonica HOM05D003483 ORTHO05D004101 6.1e-51 204.9 155 67.7
Lsat_1_v5_gn_9_118261 Lactuca sativa HOM05D003483 ORTHO05D004101 1.0e-50 204.1 188 58.5
Lalb_Chr15g0090651 Lupinus albus HOM05D003483 ORTHO05D004101 1.0e-50 204.1 144 69.4
Phvul.006G214200 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 1.8e-50 203.4 144 70.1
CAN.G336.10 Capsicum annuum HOM05D003483 ORTHO05D004101 2.3e-50 203.0 187 56.7
FAN04G0580 Fragaria x ananassa HOM05D003483 ORTHO05D004101 5.2e-50 201.8 194 58.8
Lj6g0009955 Lotus japonicus HOM05D003483 ORTHO05D004101 5.2e-50 201.8 173 62.4
arahy.Tifrunner.gnm1.ann1.021TT5 Arachis hypogaea HOM05D003483 ORTHO05D004101 6.8e-50 201.4 145 71.0
Medtr2g007300 Medicago truncatula HOM05D003483 ORTHO05D004101 6.8e-50 201.4 182 61.0
Migut.N01039 Erythranthe guttata HOM05D003483 ORTHO05D004101 1.2e-49 200.7 146 68.5
CANSAT11G2020 Cannabis sativa HOM05D003483 ORTHO05D004101 4.4e-49 198.7 187 58.3
unitig_699.g19861 Utricularia gibba HOM05D003483 ORTHO05D004101 5.7e-49 198.4 175 58.9
Psat1g224560 Pisum sativum HOM05D003483 ORTHO05D004101 9.8e-49 197.6 143 70.6
SalBow6G5065 Salvia bowleyana HOM05D003483 ORTHO05D004101 1.1e-47 194.1 192 56.8
SalBow6G7249 Salvia bowleyana HOM05D003483 ORTHO05D004101 1.1e-47 194.1 192 56.8
DCAR_021518 Daucus carota HOM05D003483 ORTHO05D004101 1.4e-47 193.7 156 62.8
Solyc11g044530.2 Solanum lycopersicum HOM05D003483 ORTHO05D004101 3.1e-47 192.6 145 66.9
Peaxi162Scf00152g01330 Petunia axillaris HOM05D003483 ORTHO05D004101 1.2e-46 190.7 192 53.6
Haze_01648 Corylus avellana HOM05D003483 ORTHO05D004101 2.0e-46 189.9 148 66.9
vmacro01767 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 3.5e-46 189.1 134 72.4
Ciclev10003624m.g Citrus clementina HOM05D003483 ORTHO05D004101 1.7e-45 186.8 141 68.8
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 1.1e-44 184.1 141 64.5
AagrBONN_evm.TU.Sc2ySwM_344.1832 Anthoceros agrestis HOM05D003483 ORTHO05D004101 1.5e-44 183.7 133 63.9
Lj6g0024243 Lotus japonicus HOM05D003483 ORTHO05D004101 2.5e-44 183.0 130 70.0
Solyc01g104320.4 Solanum lycopersicum HOM05D003483 ORTHO05D004101 3.3e-44 182.6 118 74.6
SMO347G0483 Selaginella moellendorffii HOM05D003483 ORTHO05D004101 5.6e-44 181.8 141 63.8
Oeu000193.1 Olea europaea HOM05D003483 ORTHO05D004101 1.6e-43 180.3 153 60.8
Mapoly0103s0070 Marchantia polymorpha HOM05D003483 ORTHO05D004101 3.6e-43 179.1 141 61.0
A06p42270 Brassica napus HOM05D003483 ORTHO05D004101 3.0e-42 176.0 163 58.9
BraA06t27143Z Brassica rapa HOM05D003483 ORTHO05D004101 3.0e-42 176.0 163 58.9
ECA240G4797 Erigeron canadensis HOM05D003483 ORTHO05D008021 5.2e-42 175.3 135 66.7
Oeu000192.1 Olea europaea HOM05D003483 ORTHO05D004101 5.2e-42 175.3 181 54.7
Hund01591 Selenicereus undatus HOM05D003483 ORTHO05D004101 6.8e-42 174.9 178 56.2
THA.LOC104825685 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 6.8e-42 174.9 146 63.7
BolC7t44037H Brassica oleracea HOM05D007119 ORTHO05D009220 1.2e-41 174.1 163 57.7
C07p35050 Brassica napus HOM05D003483 ORTHO05D004101 2.6e-41 172.9 163 57.1
AT3G26070 Arabidopsis thaliana HOM05D003483 ORTHO05D004101 4.4e-41 172.2 162 56.8
THA.LOC104824018 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 4.4e-41 172.2 146 63.7
Aa31LG2G6290 Aethionema arabicum HOM05D003483 ORTHO05D004101 5.7e-41 171.8 162 56.2
MSTRG.5233 Avicennia marina HOM05D003483 ORTHO05D004101 5.7e-41 171.8 192 52.6
Thhalv10004837m.g Eutrema salsugineum HOM05D003483 ORTHO05D004101 9.8e-41 171.0 162 56.2
BcaC06g33930 Brassica carinata HOM05D003483 ORTHO05D004101 1.3e-40 170.6 178 54.5
AL5G14750 Arabidopsis lyrata HOM05D003483 ORTHO05D004101 2.2e-40 169.9 162 55.6
CARHR147060 Cardamine hirsuta HOM05D003483 ORTHO05D004101 8.3e-40 167.9 162 54.9
Nitab4.5_0000044g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 1.8e-39 166.8 200 49.5
BcaC06g31094 Brassica carinata HOM05D003483 ORTHO05D004101 2.4e-39 166.4 141 60.3
Carub.0005s0393 Capsella rubella HOM05D003483 ORTHO05D004101 3.2e-39 166.0 141 58.2
AL5G14760 Arabidopsis lyrata HOM05D003483 ORTHO05D004101 1.7e-37 160.2 158 52.5
Sp2g15270 Schrenkiella parvula HOM05D003483 ORTHO05D004101 1.7e-37 160.2 141 58.2
Carub.0005s0394 Capsella rubella HOM05D003483 ORTHO05D004101 8.6e-37 157.9 141 57.4
AT3G26080 Arabidopsis thaliana HOM05D003483 ORTHO05D004101 1.1e-36 157.5 158 52.5
Duzib132G0067 Durio zibethinus HOM05D003483 ORTHO05D004101 4.3e-36 155.6 208 46.2
Sopen11g020090 Solanum pennellii HOM05D003483 ORTHO05D004101 2.1e-35 153.3 120 65.8
AUR62017511 Chenopodium quinoa HOM05D003483 ORTHO05D004101 6.2e-35 151.8 98 74.5
AUR62015051 Chenopodium quinoa HOM05D003483 ORTHO05D004101 3.1e-34 149.4 206 44.7
Nitab4.5_0001783g0130 Nicotiana tabacum HOM05D003483 ORTHO05D004101 3.1e-34 149.4 96 77.1
HPP92_011153 Vanilla planifolia HOM05D003483 ORTHO05D004101 1.2e-33 147.5 144 55.6
AUR62017510 Chenopodium quinoa HOM05D003483 ORTHO05D004101 1.5e-33 147.1 207 44.4
Lj5A251G70 Lonicera japonica HOM05D006411 ORTHO05D007563 1.7e-32 143.7 141 56.7
arahy.Tifrunner.gnm1.ann1.19GFYA Arachis hypogaea HOM05D003483 ORTHO05D004101 2.9e-32 142.9 195 47.2
Hund01593 Selenicereus undatus HOM05D003483 ORTHO05D004101 1.4e-31 140.6 143 53.1
PSO170G3925 Papaver somniferum HOM05D003483 ORTHO05D004101 7.0e-31 138.3 212 41.0
BcaC06g31097 Brassica carinata HOM05D000468 ORTHO05D004101 1.7e-29 133.7 96 67.7
ClCG09G014000 Citrullus lanatus HOM05D003483 ORTHO05D004101 8.6e-29 131.3 122 59.8
RcHm_v2.0_Chr7g0222921 Rosa chinensis HOM05D003483 ORTHO05D004101 8.6e-29 131.3 237 40.1
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 5.6e-28 128.6 170 42.4
TPR.G22934 Trifolium pratense HOM05D003483 ORTHO05D004101 6.2e-27 125.2 73 79.5
TPR.G30715 Trifolium pratense HOM05D003483 ORTHO05D004101 1.4e-26 124.0 148 52.0
Actinidia00213 Actinidia chinensis HOM05D003483 ORTHO05D004101 6.8e-26 121.7 136 50.7
TPR.G2065 Trifolium pratense HOM05D003483 ORTHO05D004101 3.4e-25 119.4 65 83.1
Sopen01g046770 Solanum pennellii HOM05D003483 ORTHO05D004101 1.3e-24 117.5 144 50.7
MCO03G426 Micromonas commoda HOM05D003483 ORTHO05D004101 1.9e-23 113.6 137 48.2
Sopen01g046760 Solanum pennellii HOM05D003483 ORTHO05D004101 2.4e-23 113.2 64 82.8
PRCOL_00005437 Prasinoderma coloniale HOM05D003483 ORTHO05D004101 5.4e-23 112.1 131 46.6
CBR_g3139 Chara braunii HOM05D003483 ORTHO05D004101 8.1e-19 98.2 150 42.0
Actinidia17473 Actinidia chinensis HOM05D004517 ORTHO05D005366 2.3e-18 96.7 69 69.6
MCO15G394 Micromonas commoda HOM05D003483 ORTHO05D004101 2.2e-16 90.1 132 37.9
TPR.G31211 Trifolium pratense HOM05D003483 ORTHO05D004101 4.3e-12 75.9 51 72.5
PRCOL_00003721 Prasinoderma coloniale HOM05D003483 ORTHO05D002254 2.0e-09 67.0 155 30.3
MCO10G165 Micromonas commoda HOM05D003483 ORTHO05D268554 4.2e-07 59.3 124 27.4
Oeu000382.1 Olea europaea HOM05D003483 ORTHO05D048325 3.5e-06 56.2 98 41.8
HPP92_027704 Vanilla planifolia HOM05D003483 ORTHO05D004101 6.0e-06 55.5 104 35.6


User provided reference genes

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