Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 0.0e+00 2627.8 1346 100.0
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 0.0e+00 2344.7 1350 87.6
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 0.0e+00 2330.1 1366 85.7
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 0.0e+00 2327.0 1322 88.4
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 0.0e+00 2187.9 1351 81.7
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 2174.8 1353 81.4
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 0.0e+00 2171.0 1351 80.8
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 2170.2 1351 80.7
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 0.0e+00 2160.6 1361 79.6
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 0.0e+00 2159.0 1351 80.3
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 0.0e+00 2152.1 1354 79.2
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 0.0e+00 2149.0 1354 79.2
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 2144.0 1351 79.8
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 2140.9 1327 79.7
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 2140.5 1360 79.1
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 2139.8 1354 78.5
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 2134.4 1354 78.4
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 0.0e+00 2134.0 1328 79.8
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 0.0e+00 2130.1 1318 80.6
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 0.0e+00 2126.7 1356 78.8
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 0.0e+00 2123.2 1355 79.1
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 2121.7 1393 77.7
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 0.0e+00 2121.7 1386 76.8
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 0.0e+00 2111.6 1329 79.3
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 0.0e+00 2100.5 1414 75.2
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 0.0e+00 2094.7 1450 74.4
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 0.0e+00 2083.1 1357 78.2
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 0.0e+00 2077.0 1352 76.3
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 2075.8 1352 76.6
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 2070.8 1322 78.7
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 2069.7 1355 76.9
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 0.0e+00 2069.3 1375 75.3
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 0.0e+00 2067.7 1357 76.2
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 0.0e+00 2065.4 1353 77.8
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 0.0e+00 2064.7 1353 76.6
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 2064.3 1351 77.9
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 0.0e+00 2062.7 1353 76.2
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 0.0e+00 2059.3 1353 76.3
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 0.0e+00 2057.3 1369 76.4
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 0.0e+00 2047.3 1355 75.9
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 0.0e+00 2043.1 1353 75.3
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 0.0e+00 2038.1 1354 74.6
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 0.0e+00 2033.5 1381 73.9
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 0.0e+00 2033.1 1356 74.1
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 0.0e+00 2030.0 1356 74.1
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 2029.6 1350 74.8
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 0.0e+00 2025.4 1364 73.5
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 0.0e+00 2022.7 1380 73.6
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 2016.5 1350 74.7
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 0.0e+00 2008.4 1353 74.2
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 0.0e+00 2006.5 1356 73.7
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 0.0e+00 1993.4 1476 70.3
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 0.0e+00 1990.7 1355 73.2
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 0.0e+00 1988.0 1350 74.2
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1987.6 1352 73.7
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 0.0e+00 1984.5 1355 72.9
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 0.0e+00 1984.5 1356 73.4
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 0.0e+00 1984.1 1365 72.7
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1982.2 1352 73.4
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 0.0e+00 1978.8 1354 72.9
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 0.0e+00 1978.8 1356 73.2
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 0.0e+00 1978.0 1356 73.0
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 0.0e+00 1974.9 1329 73.9
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 0.0e+00 1974.1 1356 72.9
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 0.0e+00 1971.1 1366 73.1
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 0.0e+00 1967.2 1365 72.5
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 0.0e+00 1959.1 1367 72.0
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 0.0e+00 1955.3 1356 72.5
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 0.0e+00 1953.7 1355 72.1
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 0.0e+00 1951.8 1377 71.5
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 0.0e+00 1951.4 1312 73.6
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 0.0e+00 1946.0 1356 72.5
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 0.0e+00 1942.9 1279 75.4
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 0.0e+00 1934.1 1369 71.4
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 0.0e+00 1932.5 1321 72.4
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 0.0e+00 1926.8 1316 72.6
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 0.0e+00 1924.4 1359 71.6
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 0.0e+00 1922.5 1354 71.9
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 0.0e+00 1912.9 1356 72.8
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 0.0e+00 1912.1 1358 71.7
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 0.0e+00 1906.3 1503 66.8
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 0.0e+00 1904.0 1366 70.9
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 0.0e+00 1897.9 1435 68.6
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1893.6 1383 71.6
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 0.0e+00 1892.5 1329 71.4
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 0.0e+00 1848.9 1355 69.7
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 0.0e+00 1834.7 1361 68.3
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 0.0e+00 1806.6 1383 67.8
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 0.0e+00 1805.4 1354 67.1
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1799.6 1236 72.2
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 0.0e+00 1784.2 1325 67.7
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 0.0e+00 1681.8 1387 65.3
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 0.0e+00 1658.7 1305 64.5
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 0.0e+00 1656.0 1352 64.1
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 1651.0 1065 77.0
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 0.0e+00 1620.1 1111 73.8
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 0.0e+00 1572.8 1352 62.1
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 0.0e+00 1496.9 1024 74.3
Pp3c3_14060 Physcomitrium patens HOM05D003697 ORTHO05D005452 0.0e+00 1476.5 1337 56.5
Mapoly0156s0022 Marchantia polymorpha HOM05D003697 ORTHO05D005452 0.0e+00 1425.2 1376 55.3
SMO276G0030 Selaginella moellendorffii HOM05D003697 ORTHO05D005452 0.0e+00 1424.1 1370 54.5
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 0.0e+00 1413.3 952 76.1
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 0.0e+00 1394.0 1205 61.7
AagrBONN_evm.TU.Sc2ySwM_362.2359 Anthoceros agrestis HOM05D003697 ORTHO05D005452 0.0e+00 1351.7 1330 53.2
ECA233G0288 Erigeron canadensis HOM05D003697 ORTHO05D005452 0.0e+00 1290.4 1320 54.4
CBR_g48619 Chara braunii HOM05D003697 ORTHO05D005452 0.0e+00 1225.3 1391 47.7
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 0.0e+00 1199.9 1025 62.7
ClCG05G009590 Citrullus lanatus HOM05D003697 ORTHO05D005452 0.0e+00 1105.1 678 81.0
CAN.G798.13 Capsicum annuum HOM05D003697 ORTHO05D005452 1.2e-288 997.3 624 78.5
BcaB03g14881 Brassica carinata HOM05D003697 ORTHO05D005452 5.2e-281 971.8 864 59.8
Psat1g220480 Pisum sativum HOM05D003697 ORTHO05D005452 2.5e-267 926.4 549 82.0
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 6.4e-263 911.8 931 54.5
ClCG05G009570 Citrullus lanatus HOM05D003697 ORTHO05D005452 1.9e-262 910.2 631 72.3
SHI16668 Sapria himalayana HOM05D003697 ORTHO05D005452 2.0e-232 810.4 725 59.4
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 1.3e-228 797.7 734 57.5
PRCOL_00004479 Prasinoderma coloniale HOM05D003697 ORTHO05D005452 4.3e-227 792.7 1375 38.5
MCO01G725 Micromonas commoda HOM05D003697 ORTHO05D005452 1.7e-186 657.9 1392 33.8
Psat1g220520 Pisum sativum HOM05D003697 ORTHO05D005452 1.2e-181 641.7 451 72.3
Cfa024915 Carpinus fangiana HOM05D003697 ORTHO05D005452 1.3e-162 578.6 1300 32.2
Gorai.008G027900 Gossypium raimondii HOM05D003697 ORTHO05D005452 3.7e-162 577.0 337 82.2
Cpa.g.sc30.4 Carica papaya HOM05D003697 ORTHO05D005452 5.4e-153 546.6 544 55.0
Actinidia06460 Actinidia chinensis HOM05D003697 ORTHO05D005452 1.8e-148 531.6 271 91.9
Gohir.D12G027400 Gossypium hirsutum HOM05D003697 ORTHO05D005452 4.1e-145 520.4 298 83.2
Lj5A253T35 Lonicera japonica HOM05D003697 ORTHO05D005452 1.9e-137 495.0 330 74.5
Eucgr.H01580 Eucalyptus grandis HOM05D003697 ORTHO05D005452 4.6e-136 490.3 252 91.3
Lalb_Chr20g0123551 Lupinus albus HOM05D003697 ORTHO05D005452 1.4e-132 478.8 319 75.5
Duzib132G0461 Durio zibethinus HOM05D003697 ORTHO05D005452 4.6e-128 463.8 271 82.7
Atru.chr6.584 Acer truncatum HOM05D003697 ORTHO05D005452 1.2e-123 449.1 297 74.4
Cc02_g22690 Coffea canephora HOM05D003697 ORTHO05D005452 3.0e-119 434.5 251 84.1
Os02g0664200 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 1.1e-116 426.0 229 85.6
Os02g0664100 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 1.5e-115 422.2 251 80.1
Gohir.D12G027466 Gossypium hirsutum HOM05D003697 ORTHO05D005452 5.5e-113 413.7 253 81.8
Eucgr.H01552 Eucalyptus grandis HOM05D003697 ORTHO05D005452 3.1e-108 397.9 267 74.5
Cpa.g.sc30.3 Carica papaya HOM05D003697 ORTHO05D005452 4.2e-105 387.5 319 63.9
Cre05.g233303 Chlamydomonas reinhardtii HOM05D003697 ORTHO05D005452 3.9e-103 380.9 1516 26.3
Gohir.D12G027532 Gossypium hirsutum HOM05D003697 ORTHO05D005452 2.0e-91 342.0 218 75.2
Psat7g199600 Pisum sativum HOM05D003697 ORTHO05D023078 5.9e-83 313.9 274 60.2
Psat7g240960 Pisum sativum HOM05D003697 ORTHO05D005452 2.0e-70 272.3 223 65.0
Psat5g083120 Pisum sativum HOM05D003697 ORTHO05D002190 1.9e-57 229.2 190 61.6
Cpa.g.sc30.5 Carica papaya HOM05D003697 ORTHO05D005452 1.4e-52 213.0 118 89.8
Psat5g210320 Pisum sativum HOM05D003697 ORTHO05D005452 4.0e-47 194.9 103 88.3
C06p46180 Brassica napus HOM05D003697 ORTHO05D033244 1.3e-45 189.9 152 67.1
C06p46230 Brassica napus HOM05D003697 ORTHO05D033244 1.3e-45 189.9 152 67.1
Psat7g198480 Pisum sativum HOM05D003697 ORTHO05D005452 7.0e-44 184.1 143 62.2
FAN13G1565 Fragaria x ananassa HOM05D003697 ORTHO05D024366 2.7e-43 182.2 119 75.6
Psat5g210280 Pisum sativum HOM05D003697 ORTHO05D005452 2.8e-40 172.2 85 91.8
Psat4g083840 Pisum sativum HOM05D003697 ORTHO05D014541 2.3e-39 169.1 185 53.0
Lj6g0025593 Lotus japonicus HOM05D003697 ORTHO05D024366 6.8e-39 167.5 119 71.4
Duzib132G0723 Durio zibethinus HOM05D003697 ORTHO05D005452 3.4e-38 165.2 122 69.7
Psat5g201760 Pisum sativum HOM05D003697 ORTHO05D023078 4.4e-38 164.9 144 57.6
Psat0s1016g0040 Pisum sativum HOM05D003697 ORTHO05D005452 9.8e-38 163.7 97 78.4
Psat0s3298g0040 Pisum sativum HOM05D003697 ORTHO05D005452 3.7e-37 161.8 97 78.4
Psat0s5727g0040 Pisum sativum HOM05D003697 ORTHO05D033244 6.4e-37 161.0 116 65.5
Psat1g065720 Pisum sativum HOM05D003697 ORTHO05D002190 4.6e-35 154.8 136 57.4
Actinidia06459 Actinidia chinensis HOM05D003697 ORTHO05D003490 5.1e-34 151.4 118 66.1
unitig_749.g14125 Utricularia gibba HOM05D003697 ORTHO05D005452 3.1e-31 142.1 109 78.0
Psat5g078760 Pisum sativum HOM05D002636 ORTHO05D003490 1.2e-30 140.2 113 60.2
CSS0037322 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.9e-28 132.9 87 75.9
CSS0043236 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.9e-28 132.9 85 76.5
CSS0007988 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.4e-28 132.5 85 76.5
CSS0047095 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.4e-28 132.5 85 77.6
CSS0037751 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 3.2e-28 132.1 85 76.5
BraA07t30719Z Brassica rapa HOM05D003697 ORTHO05D005452 4.1e-28 131.7 84 73.8
CSS0031021 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 4.1e-28 131.7 85 75.3
CSS0010224 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.2e-27 130.2 85 76.5
CSS0032709 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.2e-27 130.2 85 76.5
CSS0045184 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 3.5e-27 128.6 85 75.3
Psat1g055240 Pisum sativum HOM05D003697 ORTHO05D023078 1.3e-26 126.7 203 38.9
Psat0s625g0080 Pisum sativum HOM05D001068 ORTHO05D002190 4.7e-24 118.2 116 54.3
Psat3g186600 Pisum sativum HOM05D003697 ORTHO05D005452 1.4e-23 116.7 60 85.0
A07p30820 Brassica napus HOM05D003697 ORTHO05D005452 2.9e-21 109.0 54 88.9
Psat6g132920 Pisum sativum HOM05D003697 ORTHO05D005452 3.3e-17 95.5 66 66.7
Psat0s4378g0040 Pisum sativum HOM05D012210 ORTHO05D005452 2.8e-16 92.4 57 75.4
Psat1g073840 Pisum sativum HOM05D012210 ORTHO05D005452 8.1e-16 90.9 48 83.3
Duzib132G0509 Durio zibethinus HOM05D003697 ORTHO05D005452 2.4e-12 79.3 42 88.1
TPR.G34678 Trifolium pratense HOM05D003697 ORTHO05D014541 3.2e-12 79.0 59 67.8
Psat3g096360 Pisum sativum HOM05D003697 ORTHO05D323777 3.9e-10 72.0 36 83.3
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 6.6e-10 71.2 47 70.2
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 3.6e-08 65.5 48 66.7
Psat1g072720 Pisum sativum HOM05D003697 ORTHO05D005452 4.8e-08 65.1 31 87.1
Psat6g235600 Pisum sativum HOM05D012210 ORTHO05D005452 4.8e-08 65.1 31 87.1
Cpa.g.sc791.3 Carica papaya HOM05D003697 ORTHO05D005452 4.5e-06 58.5 86 43.0
MD03G1271300 Malus domestica HOM05D000488 ORTHO05D000347 7.6e-06 57.8 208 24.0


User provided reference genes

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