Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G131100 Carya illinoinensis HOM05D007387 ORTHO05D009321 4.5e-82 308.1 187 100.0
QL11p045571 Quercus lobata HOM05D007387 ORTHO05D009321 4.3e-32 142.1 187 57.2
Cfa005072 Carpinus fangiana HOM05D007387 ORTHO05D009321 2.3e-30 136.3 185 55.1
Ca_20916_v3 Cicer arietinum L. HOM05D007387 ORTHO05D009321 6.4e-28 128.3 187 46.0
Lalb_Chr19g0138881 Lupinus albus HOM05D007387 ORTHO05D009321 5.4e-27 125.2 192 49.0
Phvul.011G041100 Phaseolus vulgaris HOM05D007387 ORTHO05D009321 1.3e-25 120.6 191 43.5
CsaV3_7G000220 Cucumis sativus L. HOM05D007387 ORTHO05D009321 1.5e-24 117.1 191 42.9
MELO3C013435.2 Cucumis melo HOM05D007387 ORTHO05D009321 2.5e-24 116.3 194 42.3
Prupe.8G088200 Prunus persica HOM05D007387 ORTHO05D009321 9.5e-24 114.4 195 51.8
Glyma.11G113100 Glycine max HOM05D007387 ORTHO05D009321 1.2e-23 114.0 186 44.6
Lj3g0012874 Lotus japonicus HOM05D007387 ORTHO05D009321 3.6e-23 112.5 188 44.1
ClCG02G004690 Citrullus lanatus HOM05D007387 ORTHO05D009321 8.1e-23 111.3 190 44.7
Glyma.12G039000 Glycine max HOM05D007387 ORTHO05D009321 2.3e-22 109.8 187 45.5
Psat7g182600 Pisum sativum HOM05D007387 ORTHO05D009321 6.8e-22 108.2 194 44.8
TWI31G1242 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 6.8e-22 108.2 191 36.6
Cpa.g.sc139.28 Carica papaya HOM05D007387 ORTHO05D009321 2.0e-21 106.7 183 44.3
FAN15G3112 Fragaria x ananassa HOM05D007387 ORTHO05D009321 2.0e-21 106.7 185 38.4
Manes.11G087600 Manihot esculenta HOM05D007387 ORTHO05D009321 2.6e-21 106.3 198 43.4
VMungo1127G0459 Vigna mungo HOM05D007387 ORTHO05D009321 3.4e-21 105.9 191 44.0
RcHm_v2.0_Chr6g0266971 Rosa chinensis HOM05D007387 ORTHO05D009321 7.5e-21 104.8 59 79.7
Medtr4g071120 Medicago truncatula HOM05D007387 ORTHO05D009321 9.8e-21 104.4 189 45.5
TWI79G0383 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 1.3e-20 104.0 180 38.3
FAN27G1365 Fragaria x ananassa HOM05D007387 ORTHO05D009321 1.7e-20 103.6 189 37.6
MD10G1066200 Malus domestica HOM05D007387 ORTHO05D009321 2.9e-20 102.8 194 42.3
Sed0000236 Sechium edule HOM05D007387 ORTHO05D009321 2.9e-20 102.8 191 43.5
Lalb_Chr03g0025431 Lupinus albus HOM05D007387 ORTHO05D009321 3.7e-20 102.4 59 78.0
Sed0010335 Sechium edule HOM05D007387 ORTHO05D009321 8.3e-20 101.3 193 40.9
FvH4_2g10040 Fragaria vesca HOM05D007387 ORTHO05D009321 1.1e-19 100.9 187 36.9
FAN24G0663 Fragaria x ananassa HOM05D007387 ORTHO05D009321 1.1e-19 100.9 187 36.9
arahy.Tifrunner.gnm1.ann1.WH0Y0U Arachis hypogaea HOM05D007387 ORTHO05D009321 3.2e-19 99.4 59 76.3
Sabra04G0107500 Salix brachista HOM05D007387 ORTHO05D009321 4.1e-19 99.0 187 37.4
CANSAT11G0211 Cannabis sativa HOM05D007387 ORTHO05D009321 5.4e-19 98.6 60 76.7
Duzib132G0100 Durio zibethinus HOM05D007387 ORTHO05D009321 5.4e-19 98.6 174 42.0
Thecc.02G078400 Theobroma cacao HOM05D007387 ORTHO05D009321 9.2e-19 97.8 180 43.9
Atru.chr5.3107 Acer truncatum HOM05D007387 ORTHO05D009321 1.6e-18 97.1 185 44.9
Potri.004G160700 Populus trichocarpa HOM05D007387 ORTHO05D009321 2.1e-18 96.7 55 78.2
TPR.G30501 Trifolium pratense HOM05D000711 ORTHO05D000545 2.7e-18 96.3 198 39.9
Potri.009G121700 Populus trichocarpa HOM05D007387 ORTHO05D009321 3.5e-18 95.9 185 43.8
Actinidia00563 Actinidia chinensis HOM05D001785 ORTHO05D001933 6.0e-18 95.1 57 73.7
MD05G1058600 Malus domestica HOM05D007387 ORTHO05D009321 7.8e-18 94.7 196 41.8
Sabra09G0094000 Salix brachista HOM05D007387 ORTHO05D009321 7.8e-18 94.7 189 40.7
Duzib248G1112 Durio zibethinus HOM05D007387 ORTHO05D009321 1.7e-17 93.6 179 45.8
Gohir.A04G124100 Gossypium hirsutum HOM05D007387 ORTHO05D009321 2.3e-17 93.2 59 72.9
Gohir.D04G166200 Gossypium hirsutum HOM05D007387 ORTHO05D009321 6.6e-17 91.7 59 72.9
Gorai.012G154600 Gossypium raimondii HOM05D007387 ORTHO05D009321 6.6e-17 91.7 59 72.9
Actinidia11742 Actinidia chinensis HOM05D007387 ORTHO05D009321 4.3e-16 89.0 57 70.2
Gohir.D12G030300 Gossypium hirsutum HOM05D007387 ORTHO05D009321 5.6e-16 88.6 174 33.9
Gohir.A12G041900 Gossypium hirsutum HOM05D007387 ORTHO05D009321 1.6e-15 87.0 173 37.0
Dinv42018 Davidia involucrata HOM05D007387 ORTHO05D009321 2.1e-15 86.7 57 68.4
Eucgr.I01309 Eucalyptus grandis HOM05D007387 ORTHO05D009321 2.1e-15 86.7 59 67.8
vmacro02067 Vaccinium macrocarpon HOM05D007387 ORTHO05D009321 2.1e-15 86.7 57 68.4
PGR142G2532 Punica granatum HOM05D007387 ORTHO05D009321 2.8e-15 86.3 57 68.4
Sp7g32420 Schrenkiella parvula HOM05D007387 ORTHO05D009321 1.1e-14 84.3 95 47.4
THA.LOC104807296 Tarenaya hassleriana HOM05D007387 ORTHO05D009321 1.1e-14 84.3 195 41.0
Ciclev10029309m.g Citrus clementina HOM05D007387 ORTHO05D009321 2.3e-14 83.2 178 37.6
HanXRQChr16g0505141 Helianthus annuus HOM05D007387 ORTHO05D009321 5.2e-14 82.0 57 64.9
Aa31LG2G15890 Aethionema arabicum HOM05D007387 ORTHO05D009321 6.8e-14 81.6 192 32.3
Lsat_1_v5_gn_7_91901 Lactuca sativa HOM05D007387 ORTHO05D009321 6.8e-14 81.6 56 69.6
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 8.9e-14 81.3 58 62.1
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.5e-13 80.5 58 62.1
Cc02_g17100 Coffea canephora HOM05D007387 ORTHO05D009321 2.0e-13 80.1 198 38.4
Thhalv10026183m.g Eutrema salsugineum HOM05D007387 ORTHO05D009321 2.0e-13 80.1 55 63.6
A01p03860 Brassica napus HOM05D007387 ORTHO05D009321 2.6e-13 79.7 56 67.9
ECA236G2541 Erigeron canadensis HOM05D007387 ORTHO05D009321 2.6e-13 79.7 57 66.7
arahy.Tifrunner.gnm1.ann1.TWZZ0X Arachis hypogaea HOM05D007387 ORTHO05D009321 5.8e-13 78.6 178 41.6
HanXRQChr04g0127721 Helianthus annuus HOM05D007387 ORTHO05D009321 5.8e-13 78.6 57 64.9
BcaNung04919 Brassica carinata HOM05D007387 ORTHO05D009321 9.9e-13 77.8 87 47.1
Oeu008575.1 Olea europaea HOM05D007387 ORTHO05D009321 9.9e-13 77.8 58 56.9
Sc18g0005240 Simmondsia chinensis HOM05D007387 ORTHO05D009321 9.9e-13 77.8 53 60.4
BcaNung04916 Brassica carinata HOM05D007387 ORTHO05D009321 1.3e-12 77.4 87 47.1
CAN.G170.83 Capsicum annuum HOM05D007387 ORTHO05D009321 2.9e-12 76.3 57 59.6
DCAR_003650 Daucus carota HOM05D007387 ORTHO05D009321 4.9e-12 75.5 57 59.6
DCAR_009554 Daucus carota HOM05D007387 ORTHO05D009321 8.4e-12 74.7 57 61.4
PGSC0003DMG400030970 Solanum tuberosum HOM05D007387 ORTHO05D009321 8.4e-12 74.7 55 60.0
TWI75G1034 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 1.1e-11 74.3 53 62.3
Solyc01g110150.2 Solanum lycopersicum HOM05D007387 ORTHO05D009321 2.4e-11 73.2 55 58.2
Sopen01g052310 Solanum pennellii HOM05D007387 ORTHO05D009321 3.2e-11 72.8 55 58.2
Carub.0007s0565 Capsella rubella HOM05D007387 ORTHO05D009321 4.1e-11 72.4 59 59.3
FAN15G0178 Fragaria x ananassa HOM05D007387 ORTHO05D009321 5.4e-11 72.0 173 34.1
AL7G16570 Arabidopsis lyrata HOM05D007387 ORTHO05D009321 7.1e-11 71.6 56 62.5
Ah.01g018920 Amaranthus hybridus HOM05D001785 ORTHO05D001933 9.2e-11 71.2 55 52.7
BcaNung00681 Brassica carinata HOM05D007387 ORTHO05D009321 9.2e-11 71.2 206 33.0
C01p04170 Brassica napus HOM05D007387 ORTHO05D009321 9.2e-11 71.2 206 33.0
BolC1t00405H Brassica oleracea HOM05D007387 ORTHO05D009321 9.2e-11 71.2 206 33.0
FAN21G1657 Fragaria x ananassa HOM05D007387 ORTHO05D009321 2.1e-10 70.1 44 72.7
Peaxi162Scf00003g00073 Petunia axillaris HOM05D007387 ORTHO05D009321 3.5e-10 69.3 55 56.4
BraA01t00373Z Brassica rapa HOM05D007387 ORTHO05D009321 6.0e-10 68.6 97 46.4
CARHR106690 Cardamine hirsuta HOM05D007387 ORTHO05D009321 7.8e-10 68.2 56 55.4
FAN25G2925 Fragaria x ananassa HOM05D007387 ORTHO05D009321 1.3e-09 67.4 43 72.1
FAN20G0098 Fragaria x ananassa HOM05D007387 ORTHO05D009321 3.9e-09 65.9 44 68.2
Oeu055620.1 Olea europaea HOM05D007387 ORTHO05D009321 3.9e-09 65.9 55 52.7
AT4G34630 Arabidopsis thaliana HOM05D007387 ORTHO05D009321 5.1e-09 65.5 50 64.0
EL10Ac9g21673 Beta vulgaris HOM05D007387 ORTHO05D009321 1.5e-08 63.9 92 41.3
Actinidia12738 Actinidia chinensis HOM05D007387 ORTHO05D009321 2.5e-08 63.2 56 57.1
Actinidia27864 Actinidia chinensis HOM05D007387 ORTHO05D009321 2.5e-08 63.2 56 57.1
CARHR242940 Cardamine hirsuta HOM05D007387 ORTHO05D009321 2.5e-08 63.2 55 60.0
Hma1.2p1_0066F.1_g035940 Hydrangea macrophylla HOM05D007387 ORTHO05D009321 2.5e-08 63.2 56 53.6
Haze_02310 Corylus avellana HOM05D007387 ORTHO05D009321 5.6e-08 62.0 37 78.4
AL3G52630 Arabidopsis lyrata HOM05D007387 ORTHO05D009321 1.4e-06 57.4 54 53.7
Peaxi162Scf00016g00025 Petunia axillaris HOM05D007387 ORTHO05D009321 4.0e-06 55.8 52 59.6
Carub.0003s3021 Capsella rubella HOM05D007387 ORTHO05D009321 5.2e-06 55.5 96 39.6


User provided reference genes

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