Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 2.1e-183 645.6 336 100.0
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 2.1e-154 549.3 335 87.5
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 1.1e-136 490.3 332 79.8
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 2.0e-136 489.6 334 78.4
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 3.3e-136 488.8 328 79.9
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 2.2e-135 486.1 314 81.5
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 3.7e-135 485.3 336 77.4
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 1.5e-133 479.9 334 76.6
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 4.5e-133 478.4 334 76.9
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 3.8e-132 475.3 309 80.6
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 1.1e-131 473.8 324 76.5
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 4.2e-131 471.9 327 77.1
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 7.2e-131 471.1 337 75.1
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.6e-130 469.9 327 75.8
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 2.1e-130 469.5 310 78.7
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 1.8e-129 466.5 332 74.4
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 3.0e-129 465.7 277 87.4
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 6.7e-129 464.5 330 73.9
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 2.0e-128 463.0 279 85.7
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 3.3e-128 462.2 315 79.4
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 2.8e-127 459.1 277 84.8
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 4.1e-126 455.3 342 72.2
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 5.3e-126 454.9 347 70.9
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.6e-125 453.4 308 75.3
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 7.7e-125 451.1 313 75.7
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 7.7e-125 451.1 308 74.7
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 1.7e-124 449.9 281 81.5
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 1.1e-123 447.2 333 71.8
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 1.1e-123 447.2 309 74.4
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 1.5e-123 446.8 281 80.8
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 9.4e-123 444.1 307 73.9
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 1.2e-122 443.7 338 71.6
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 6.1e-122 441.4 337 70.6
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 1.4e-121 440.3 334 70.1
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 6.7e-121 438.0 291 78.0
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.2e-120 437.2 385 64.2
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 1.5e-120 436.8 332 69.9
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 2.6e-120 436.0 322 70.5
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 3.3e-120 435.6 307 72.6
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 7.5e-120 434.5 320 71.6
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 1.7e-119 433.3 310 70.6
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 2.8e-119 432.6 283 77.4
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 2.8e-119 432.6 289 78.9
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 6.3e-119 431.4 356 67.4
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 6.3e-119 431.4 336 69.3
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 1.1e-118 430.6 335 69.0
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 3.1e-118 429.1 334 70.7
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 4.1e-118 428.7 371 64.7
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 7.0e-118 427.9 362 66.3
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 3.5e-117 425.6 287 76.0
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 4.5e-117 425.2 331 69.8
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 7.7e-117 424.5 316 70.9
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 2.9e-116 422.5 319 70.2
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 2.5e-115 419.5 292 74.3
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 2.5e-115 419.5 307 71.3
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 1.6e-114 416.8 312 69.2
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 1.6e-114 416.8 331 66.2
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 2.1e-114 416.4 324 70.4
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 3.6e-114 415.6 300 68.7
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 3.6e-114 415.6 321 66.7
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 4.7e-114 415.2 323 66.6
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 1.5e-112 410.2 319 68.7
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 9.8e-112 407.5 319 67.4
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 9.8e-112 407.5 289 72.0
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 2.8e-111 406.0 278 77.3
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 1.8e-110 403.3 257 78.2
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 5.4e-110 401.7 325 65.8
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 7.0e-110 401.4 324 65.7
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.2e-109 400.6 281 75.4
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 3.5e-109 399.1 323 65.6
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 4.5e-109 398.7 324 65.4
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 5.9e-109 398.3 247 84.2
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 2.1e-106 389.8 344 65.1
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 2.0e-104 383.3 277 69.7
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 5.7e-104 381.7 305 67.5
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 2.8e-103 379.4 337 65.9
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.4e-102 377.1 277 72.9
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 5.4e-102 375.2 305 66.9
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 2.7e-101 372.9 288 68.1
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 7.8e-101 371.3 251 72.9
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 1.7e-100 370.2 355 60.3
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 1.3e-95 354.0 338 60.1
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 1.7e-95 353.6 342 60.5
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 3.7e-95 352.4 262 74.0
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 8.3e-95 351.3 280 69.3
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 4.1e-94 349.0 320 60.6
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 2.7e-93 346.3 335 59.4
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.1e-91 340.9 332 58.7
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 5.6e-91 338.6 332 58.4
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.1e-90 336.7 332 58.1
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 2.5e-83 313.2 292 62.7
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 3.3e-83 312.8 335 49.9
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 1.6e-82 310.5 197 81.2
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 4.1e-78 295.8 337 49.0
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 1.0e-76 291.2 198 73.7
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 3.1e-73 279.6 273 54.2
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 7.6e-72 275.0 275 53.8
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 6.4e-71 271.9 275 53.5
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 7.8e-69 265.0 162 82.7
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 7.3e-67 258.5 275 52.4
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 1.6e-66 257.3 260 55.8
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 1.5e-64 250.8 352 46.3
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 5.1e-60 235.7 207 62.3
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 2.8e-58 229.9 195 62.6
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 4.5e-56 222.6 179 65.9
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 1.8e-49 200.7 134 76.9
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 9.6e-43 178.3 114 79.8
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 3.7e-42 176.4 144 66.0
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 5.1e-36 156.0 186 50.0
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 4.3e-35 152.9 247 35.2
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 7.4e-35 152.1 188 47.9
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 4.5e-32 142.9 104 74.0
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 1.3e-31 141.4 186 46.2
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 1.3e-31 141.4 73 93.2
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 4.2e-30 136.3 212 42.5
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 2.1e-29 134.0 225 41.8
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 3.6e-29 133.3 214 42.1
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 3.3e-27 126.7 69 89.9
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 9.7e-27 125.2 288 31.2
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 8.2e-26 122.1 137 53.3
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 8.2e-26 122.1 79 83.5
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 1.8e-25 120.9 241 32.8
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 1.7e-23 114.4 212 39.2
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 4.2e-22 109.8 124 53.2
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 1.2e-21 108.2 87 64.4
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 1.4e-20 104.8 90 57.8
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 2.3e-20 104.0 71 71.8
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 6.5e-15 85.9 115 46.1
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 7.2e-14 82.4 61 68.9
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 1.2e-13 81.6 128 38.3
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 5.2e-12 76.3 61 63.9
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 6.7e-12 75.9 57 70.2
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 1.1e-11 75.1 78 52.6
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 1.5e-11 74.7 94 48.9
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 4.1e-09 66.6 34 91.2
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 3.5e-08 63.5 34 85.3
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 7.7e-08 62.4 39 71.8
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 1.3e-07 61.6 146 30.8


User provided reference genes

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