Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 3.7e-111 404.8 198 100.0
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 7.3e-83 310.8 206 77.2
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 3.8e-79 298.5 200 74.0
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 1.0e-76 290.4 197 74.6
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 8.7e-76 287.3 197 74.1
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 1.9e-70 269.6 199 69.8
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 1.6e-69 266.5 191 70.2
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 7.9e-69 264.2 205 67.8
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 2.3e-68 262.7 198 67.2
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 1.4e-65 253.4 201 65.7
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 3.1e-65 252.3 221 60.6
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 3.1e-65 252.3 216 62.0
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 4.0e-65 251.9 194 68.0
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 1.5e-64 250.0 193 67.9
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 2.9e-63 245.7 201 63.7
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 5.5e-62 241.5 216 61.6
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.2e-61 240.4 176 66.5
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 1.6e-61 240.0 211 61.1
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 1.6e-61 240.0 180 67.2
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 4.6e-61 238.4 203 63.5
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 3.9e-60 235.3 191 63.9
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 3.9e-60 235.3 179 65.9
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 3.9e-60 235.3 216 58.3
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.1e-59 233.8 191 63.4
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 1.9e-59 233.0 207 59.4
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 5.7e-59 231.5 212 59.4
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 9.6e-59 230.7 200 60.5
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 9.6e-59 230.7 198 62.1
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 1.6e-58 229.9 176 66.5
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 3.7e-58 228.8 183 65.0
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 3.7e-58 228.8 183 65.0
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.8e-58 228.4 181 64.6
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 9.0e-57 224.2 176 65.3
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 2.6e-56 222.6 198 62.6
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 4.5e-56 221.9 210 57.6
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 5.9e-56 221.5 221 56.6
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.3e-55 220.3 206 58.3
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 5.0e-55 218.4 176 64.2
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 6.5e-55 218.0 210 56.7
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 2.5e-54 216.1 198 60.1
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 4.2e-54 215.3 206 54.4
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 1.2e-53 213.8 179 61.5
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 1.8e-52 209.9 223 53.8
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 1.8e-52 209.9 198 57.1
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 1.1e-51 207.2 209 54.1
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 1.5e-51 206.8 180 57.8
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 1.5e-51 206.8 204 52.9
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 5.7e-51 204.9 169 59.8
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 7.4e-51 204.5 197 57.4
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 7.4e-51 204.5 217 53.5
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 3.7e-50 202.2 202 52.5
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 3.7e-50 202.2 185 57.8
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 1.8e-49 199.9 216 51.9
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.8e-49 199.9 185 58.4
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 4.1e-49 198.7 178 57.3
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 6.9e-49 198.0 174 58.6
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 1.5e-48 196.8 198 53.0
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.5e-48 196.8 183 58.5
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 2.0e-48 196.4 197 53.8
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 1.0e-47 194.1 196 52.0
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 1.0e-47 194.1 205 52.2
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 1.3e-47 193.7 223 47.5
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.7e-47 193.4 186 57.0
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 2.2e-47 193.0 205 53.2
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 3.8e-47 192.2 207 52.2
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 3.8e-47 192.2 177 55.4
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 5.0e-47 191.8 173 54.9
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 6.5e-47 191.4 176 55.1
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 8.5e-47 191.0 173 56.6
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 1.1e-46 190.7 175 52.6
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.1e-46 190.7 186 55.9
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 1.9e-46 189.9 223 46.6
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 2.5e-46 189.5 180 56.7
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 3.2e-46 189.1 210 51.4
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 4.2e-46 188.7 206 48.1
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 9.4e-46 187.6 206 51.0
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 2.1e-45 186.4 200 51.0
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 2.1e-45 186.4 205 47.8
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 3.6e-45 185.7 177 53.1
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 3.6e-45 185.7 154 61.7
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 4.6e-45 185.3 170 58.2
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 7.9e-45 184.5 197 51.8
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 2.3e-44 183.0 216 50.9
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 5.1e-44 181.8 229 48.5
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 6.7e-44 181.4 213 50.7
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 5.7e-43 178.3 200 50.5
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 1.7e-42 176.8 175 50.9
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 2.2e-42 176.4 172 52.9
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 1.1e-41 174.1 181 53.0
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 1.1e-41 174.1 207 49.3
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 1.8e-41 173.3 191 51.3
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 1.8e-41 173.3 191 51.3
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 3.1e-41 172.6 195 49.2
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 4.1e-41 172.2 191 50.8
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 4.1e-41 172.2 191 50.8
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 4.1e-41 172.2 191 50.8
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 5.3e-41 171.8 196 49.5
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 2.0e-40 169.9 156 59.6
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 4.5e-40 168.7 189 49.7
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 4.5e-40 168.7 198 49.0
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 7.7e-40 167.9 133 63.2
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 7.7e-40 167.9 231 43.3
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 1.0e-39 167.5 192 49.0
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 1.3e-39 167.2 228 44.3
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 2.9e-39 166.0 162 54.3
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 1.2e-37 160.6 188 47.9
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 1.8e-36 156.8 162 53.1
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 5.7e-35 151.8 151 53.0
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 9.7e-35 151.0 208 40.9
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 1.3e-34 150.6 181 48.6
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 1.3e-34 150.6 191 43.5
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 2.8e-34 149.4 290 36.9
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 3.7e-34 149.1 139 54.0
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 3.7e-34 149.1 189 42.9
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 8.2e-34 147.9 100 72.0
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 1.8e-33 146.7 147 54.4
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 1.8e-33 146.7 106 67.0
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 1.8e-33 146.7 190 44.7
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 2.0e-32 143.3 157 50.3
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 2.6e-32 142.9 136 58.1
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 7.7e-32 141.4 175 47.4
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 8.5e-31 137.9 194 45.4
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 2.1e-29 133.3 113 54.9
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 6.1e-29 131.7 205 42.0
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 8.0e-29 131.3 201 37.8
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.3e-28 129.8 199 37.7
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 3.0e-28 129.4 126 50.0
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.1e-27 127.5 200 39.0
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 2.0e-27 126.7 167 47.3
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 5.7e-27 125.2 180 43.3
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.3e-26 124.0 174 39.1
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.7e-26 123.6 180 42.8
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.2e-26 123.2 188 42.6
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 2.2e-26 123.2 167 44.3
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 3.7e-26 122.5 192 40.6
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 5.3e-25 118.6 103 57.3
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 9.1e-25 117.9 298 31.9
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.1e-22 110.9 194 32.0
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 1.9e-22 110.2 135 44.4
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 3.2e-22 109.4 186 35.5
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 4.2e-22 109.0 136 41.9
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.2e-21 107.5 191 36.1
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 1.6e-21 107.1 186 39.8
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 6.1e-21 105.1 97 51.5
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 8.0e-21 104.8 147 43.5
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 8.8e-20 101.3 130 42.3
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 9.8e-19 97.8 77 58.4
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 4.1e-17 92.4 118 44.1
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.7e-16 89.7 115 47.8
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 7.2e-14 81.6 66 57.6
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 2.7e-13 79.7 56 66.1
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 1.8e-12 77.0 248 27.8
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 2.7e-08 63.2 189 32.3
TAR626G0405 Trochodendron aralioides HOM05D000010 ORTHO05D016350 6.6e-07 58.5 42 64.3
CBR_g17049 Chara braunii HOM05D068249 ORTHO05D005712 1.1e-06 57.8 189 26.5


User provided reference genes

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