Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 6.2e-64 247.3 123 100.0
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.3e-42 176.4 98 84.7
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.6e-38 162.2 96 77.1
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 2.9e-37 158.7 98 78.6
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 3.8e-37 158.3 98 77.6
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 4.9e-37 157.9 97 75.3
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.4e-36 156.4 98 73.5
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 1.9e-36 156.0 99 76.8
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 5.5e-36 154.5 97 74.2
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 1.2e-35 153.3 96 74.0
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 1.6e-35 152.9 97 73.2
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 2.7e-35 152.1 98 75.5
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 3.5e-35 151.8 101 71.3
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 3.0e-34 148.7 97 74.2
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 3.9e-34 148.3 103 67.0
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 5.1e-34 147.9 103 67.0
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 5.1e-34 147.9 98 70.4
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 6.7e-34 147.5 94 73.4
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 1.5e-33 146.4 97 70.1
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.5e-33 146.4 103 66.0
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 1.5e-33 146.4 101 68.3
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.9e-33 146.0 94 73.4
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 5.6e-33 144.4 94 72.3
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 2.1e-32 142.5 95 66.3
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 6.2e-32 141.0 102 66.7
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 6.2e-32 141.0 101 66.3
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 6.2e-32 141.0 93 72.0
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.8e-31 139.4 104 64.4
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 4.0e-31 138.3 104 64.4
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 4.0e-31 138.3 104 64.4
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 6.9e-31 137.5 101 67.3
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 6.9e-31 137.5 101 67.3
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.2e-30 136.7 92 70.7
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 1.5e-30 136.3 99 66.7
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 1.5e-30 136.3 99 66.7
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 2.6e-30 135.6 100 64.0
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 2.6e-30 135.6 95 68.4
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 3.4e-30 135.2 99 68.7
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 5.8e-30 134.4 104 63.5
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 2.2e-29 132.5 102 61.8
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 2.2e-29 132.5 99 69.7
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 3.8e-29 131.7 95 64.2
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.4e-28 129.8 100 61.0
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.4e-28 129.8 88 69.3
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 2.5e-28 129.0 96 67.7
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 3.2e-28 128.6 99 64.6
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 4.2e-28 128.3 101 63.4
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 5.5e-28 127.9 98 64.3
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 7.1e-28 127.5 103 62.1
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 7.1e-28 127.5 103 62.1
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 9.3e-28 127.1 97 67.0
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 1.8e-26 122.9 106 60.4
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 3.9e-26 121.7 95 64.2
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 5.1e-26 121.3 101 61.4
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 1.9e-25 119.4 86 62.8
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 4.3e-25 118.2 95 55.8
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 1.3e-24 116.7 86 65.1
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.6e-24 116.3 74 68.9
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 2.8e-24 115.5 103 58.3
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 3.7e-24 115.2 97 61.9
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 3.7e-24 115.2 83 66.3
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 6.3e-24 114.4 97 62.9
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 1.8e-23 112.8 94 62.8
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 3.1e-23 112.1 96 60.4
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 4.1e-23 111.7 99 60.6
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 6.9e-23 110.9 83 59.0
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 6.9e-23 110.9 121 52.1
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 1.2e-22 110.2 98 56.1
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 1.5e-22 109.8 100 65.0
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 1.5e-22 109.8 110 52.7
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 2.6e-22 109.0 96 56.2
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 2.6e-22 109.0 98 55.1
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 3.4e-22 108.6 112 53.6
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 7.6e-22 107.5 109 53.2
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 7.6e-22 107.5 101 56.4
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.7e-21 106.3 103 54.4
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.7e-21 106.3 103 54.4
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 1.7e-21 106.3 115 47.8
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 1.7e-21 106.3 115 52.2
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 2.2e-21 105.9 95 58.9
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 2.2e-21 105.9 98 53.1
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 2.9e-21 105.5 100 53.0
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 2.9e-21 105.5 100 53.0
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 3.8e-21 105.1 92 56.5
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 3.8e-21 105.1 100 56.0
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 5.0e-21 104.8 83 61.4
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 6.5e-21 104.4 99 55.6
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 6.5e-21 104.4 81 60.5
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 1.1e-20 103.6 109 52.3
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 1.1e-20 103.6 116 50.9
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 1.4e-20 103.2 99 54.5
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 1.4e-20 103.2 95 53.7
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 1.4e-20 103.2 116 50.9
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 2.5e-20 102.4 98 55.1
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 5.5e-20 101.3 90 55.6
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 5.5e-20 101.3 100 57.0
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 9.3e-20 100.5 99 51.5
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 9.3e-20 100.5 93 58.1
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 1.6e-19 99.8 110 50.0
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 2.7e-19 99.0 90 57.8
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 2.7e-19 99.0 96 52.1
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 2.3e-18 95.9 100 53.0
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 3.9e-18 95.1 104 52.9
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 6.7e-18 94.4 103 51.5
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 2.5e-17 92.4 121 45.5
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 7.4e-17 90.9 107 49.5
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 1.3e-16 90.1 96 49.0
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 8.2e-16 87.4 101 46.5
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 1.1e-15 87.0 93 54.8
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 1.4e-15 86.7 87 55.2
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 1.3e-13 80.1 83 51.8
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 1.7e-13 79.7 49 61.2
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 2.2e-13 79.3 102 49.0
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 2.2e-13 79.3 84 51.2
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 2.9e-13 79.0 71 53.5
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 6.5e-13 77.8 48 66.7
RcHm_v2.0_Chr4g0418711 Rosa chinensis HOM05D005114 ORTHO05D006301 8.5e-13 77.4 69 60.9
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 4.2e-12 75.1 100 45.0
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 4.2e-12 75.1 81 49.4
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 7.2e-12 74.3 88 50.0
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 7.2e-12 74.3 100 49.0
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 9.4e-12 73.9 99 49.5
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 9.4e-12 73.9 99 49.5
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 9.4e-12 73.9 99 49.5
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.2e-11 73.6 103 48.5
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 3.6e-11 72.0 100 46.0
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 3.6e-11 72.0 42 69.0
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.8e-10 69.7 96 46.9
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 1.8e-10 69.7 47 61.7
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 3.9e-10 68.6 94 39.4
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 5.1e-10 68.2 60 53.3
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 8.8e-10 67.4 86 48.8
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.3e-08 63.5 101 41.6
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 2.8e-08 62.4 104 43.3
Thhalv10021664m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 8.2e-08 60.8 71 47.9
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 8.2e-08 60.8 98 40.8
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.4e-07 60.1 86 50.0
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 7.0e-07 57.8 90 42.2


User provided reference genes

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