Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 7.0e-122 440.7 226 100.0
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 8.9e-101 370.5 218 81.7
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.2e-100 370.2 218 81.7
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 1.5e-100 369.8 226 81.4
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.7e-99 366.3 218 81.7
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 6.4e-99 364.4 219 82.2
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 1.4e-98 363.2 216 83.8
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 2.4e-98 362.5 219 80.8
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 3.2e-98 362.1 219 80.4
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 4.1e-98 361.7 219 80.8
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 4.1e-98 361.7 226 80.5
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 5.4e-98 361.3 218 80.3
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 1.6e-97 359.8 217 79.7
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 2.1e-97 359.4 218 79.8
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 2.1e-97 359.4 219 79.0
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.7e-97 359.0 226 79.2
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 1.3e-96 356.7 215 81.4
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 1.7e-96 356.3 218 79.8
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 3.0e-96 355.5 220 77.7
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 3.0e-96 355.5 221 78.7
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 5.1e-96 354.8 215 81.4
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.1e-95 353.6 214 82.2
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 1.5e-95 353.2 215 80.9
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 1.5e-95 353.2 220 76.4
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 1.5e-95 353.2 228 76.3
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 1.9e-95 352.8 217 80.6
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 2.5e-95 352.4 221 77.8
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 3.3e-95 352.1 216 81.0
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 5.6e-95 351.3 217 78.8
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.3e-95 350.9 215 80.5
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.6e-94 349.7 218 78.9
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 2.1e-94 349.4 217 78.3
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 4.7e-94 348.2 220 78.6
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 6.2e-94 347.8 218 78.4
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 6.2e-94 347.8 218 78.4
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 8.1e-94 347.4 240 72.5
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 8.1e-94 347.4 217 78.8
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 1.1e-93 347.1 215 79.1
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 1.1e-93 347.1 226 77.0
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.4e-93 346.7 217 76.5
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 1.8e-93 346.3 217 75.1
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 2.3e-93 345.9 218 76.1
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 2.3e-93 345.9 216 77.3
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 2.3e-93 345.9 218 76.6
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 3.1e-93 345.5 218 75.7
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 3.1e-93 345.5 218 75.7
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 3.1e-93 345.5 218 77.5
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 4.0e-93 345.1 217 76.0
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 4.0e-93 345.1 218 75.7
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 6.8e-93 344.4 223 76.2
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 6.8e-93 344.4 218 75.7
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 6.8e-93 344.4 216 76.4
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 6.8e-93 344.4 214 78.0
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 8.9e-93 344.0 214 78.0
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 8.9e-93 344.0 214 78.0
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 1.2e-92 343.6 216 76.9
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.2e-92 343.6 216 76.4
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 2.0e-92 342.8 218 75.2
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 2.0e-92 342.8 215 76.3
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 2.6e-92 342.4 218 77.5
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 3.4e-92 342.0 218 75.2
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 3.4e-92 342.0 218 76.6
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 4.4e-92 341.7 216 75.9
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 4.4e-92 341.7 218 76.1
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 4.4e-92 341.7 217 76.0
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 5.8e-92 341.3 215 76.7
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 5.8e-92 341.3 214 78.0
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 7.6e-92 340.9 217 77.9
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 9.9e-92 340.5 218 76.1
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 1.7e-91 339.7 216 75.0
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 1.7e-91 339.7 221 76.9
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 1.7e-91 339.7 221 76.9
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 2.2e-91 339.3 222 76.1
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 2.2e-91 339.3 222 77.0
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 2.9e-91 339.0 215 76.7
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 2.9e-91 339.0 222 74.8
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 3.7e-91 338.6 215 76.7
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 4.9e-91 338.2 217 74.2
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 8.3e-91 337.4 217 77.9
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 1.1e-90 337.0 217 77.4
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 1.4e-90 336.7 229 71.2
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 1.4e-90 336.7 215 76.3
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 1.9e-90 336.3 221 73.8
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 2.4e-90 335.9 215 74.9
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 2.4e-90 335.9 217 76.0
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 4.1e-90 335.1 216 77.3
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 7.1e-90 334.3 217 74.7
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 9.2e-90 334.0 217 75.6
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 1.2e-89 333.6 217 73.7
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 1.2e-89 333.6 217 73.3
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 3.5e-89 332.0 216 74.5
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 3.5e-89 332.0 206 78.2
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 4.6e-89 331.6 217 75.6
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 1.0e-88 330.5 222 74.3
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 1.3e-88 330.1 217 75.1
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 1.7e-88 329.7 223 73.1
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 3.9e-88 328.6 223 73.1
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 5.1e-88 328.2 204 78.9
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 3.3e-87 325.5 217 73.3
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 1.6e-86 323.2 206 74.8
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 3.6e-86 322.0 227 70.5
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 6.2e-86 321.2 205 75.1
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 6.2e-86 321.2 213 73.7
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.1e-86 320.9 215 74.4
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 8.1e-86 320.9 204 75.5
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.4e-85 319.3 215 74.4
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 4.4e-84 315.1 209 73.2
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 4.4e-84 315.1 209 73.2
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 5.8e-84 314.7 204 74.0
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 2.2e-83 312.8 216 70.8
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 2.2e-83 312.8 218 71.1
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 2.9e-83 312.4 205 74.1
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 4.9e-83 311.6 203 75.4
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 1.1e-82 310.5 222 70.3
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.9e-82 309.7 224 68.3
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.9e-82 309.7 251 65.3
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 1.9e-82 309.7 205 72.2
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 3.2e-82 308.9 204 73.5
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 3.2e-82 308.9 208 74.0
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 4.2e-82 308.5 207 72.9
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 3.5e-81 305.4 201 72.1
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 3.5e-81 305.4 241 65.1
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 1.7e-80 303.1 202 72.8
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 3.9e-80 302.0 194 78.4
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 1.5e-79 300.1 202 72.8
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 3.3e-79 298.9 227 66.1
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 1.6e-78 296.6 213 70.4
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 3.6e-78 295.4 226 67.3
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 7.6e-76 287.7 211 72.0
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 1.9e-74 283.1 186 74.7
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 7.1e-74 281.2 211 64.9
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 2.1e-73 279.6 213 63.4
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 7.3e-71 271.2 216 64.4
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 7.3e-71 271.2 198 65.2
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 3.1e-69 265.8 175 73.1
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 2.0e-68 263.1 160 80.6
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 4.9e-67 258.5 214 61.7
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 6.4e-67 258.1 208 64.4
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.4e-66 256.1 231 59.7
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 6.7e-64 248.1 211 59.7
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 1.9e-63 246.5 152 78.9
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 1.9e-63 246.5 211 64.9
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 2.5e-63 246.1 201 63.2
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 2.5e-63 246.1 159 74.2
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 2.5e-63 246.1 196 65.3
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 5.6e-63 245.0 219 57.1
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 3.7e-62 242.3 206 60.7
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 6.5e-59 231.5 213 57.3
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 7.1e-58 228.0 214 56.1
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.1e-57 226.5 186 65.1
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 2.7e-57 226.1 209 57.4
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 6.0e-57 224.9 212 55.2
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.7e-56 221.1 215 57.2
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 9.6e-55 217.6 183 63.9
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 2.6e-52 209.5 211 52.1
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 6.5e-43 178.3 213 51.2
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 1.1e-42 177.6 235 44.3
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 3.3e-39 166.0 241 42.7
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 2.2e-38 163.3 107 79.4
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.4e-37 160.6 220 44.1
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.2e-36 157.5 104 69.2
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.0e-35 154.5 111 64.0
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 3.8e-35 152.5 216 43.1
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 1.0e-32 144.4 94 77.7
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.4e-31 138.3 165 49.7
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 4.5e-28 129.0 109 66.1
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 5.0e-27 125.6 78 78.2
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 5.5e-26 122.1 158 42.4
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 2.5e-18 96.7 68 64.7
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 5.5e-18 95.5 73 61.6
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 1.6e-17 94.0 201 31.8
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 5.2e-16 89.0 72 63.9
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.5e-10 70.1 105 40.0
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 3.4e-07 59.7 71 42.3
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 4.4e-07 59.3 40 65.0
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 8.3e-06 55.1 77 49.4


User provided reference genes

Program Settings