Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 5.2e-246 854.0 440 100.0
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.5e-229 799.3 440 93.4
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 4.1e-227 791.2 440 92.5
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 2.5e-224 781.9 441 92.1
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 1.8e-214 749.2 442 87.8
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 1.7e-212 742.7 442 86.9
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 2.4e-211 738.8 443 86.9
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 3.2e-211 738.4 413 92.0
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 9.2e-211 736.9 443 85.6
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 7.8e-210 733.8 443 86.2
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 6.6e-209 730.7 443 85.3
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 1.1e-208 729.9 444 85.6
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.5e-208 729.6 447 86.6
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 3.3e-208 728.4 443 85.3
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 7.3e-208 727.2 443 85.6
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 7.3e-208 727.2 445 86.1
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 9.5e-208 726.9 442 85.3
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 2.8e-207 725.3 441 85.0
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 3.6e-207 724.9 444 84.7
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 1.8e-206 722.6 441 84.8
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 1.8e-206 722.6 441 85.0
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.8e-206 722.6 441 84.6
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 8.9e-206 720.3 440 85.0
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 1.2e-205 719.9 441 85.3
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.2e-205 719.9 441 84.1
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 1.5e-205 719.5 445 85.2
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 2.6e-205 718.8 444 84.0
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 5.8e-205 717.6 442 83.3
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 9.9e-205 716.8 441 85.0
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 1.7e-204 716.1 439 83.4
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 1.7e-204 716.1 439 83.4
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.7e-204 716.1 440 83.2
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 2.2e-204 715.7 443 84.2
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 2.2e-204 715.7 419 86.9
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.9e-204 715.3 440 83.9
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.9e-204 715.3 442 83.9
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 6.4e-204 714.1 441 84.4
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 8.3e-204 713.8 441 84.4
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 8.3e-204 713.8 439 84.5
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.4e-203 713.0 440 84.8
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.4e-203 713.0 440 85.0
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 1.4e-203 713.0 440 84.8
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.9e-203 712.6 441 83.2
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 2.4e-203 712.2 439 84.3
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 4.1e-203 711.4 442 83.9
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 3.5e-202 708.4 443 83.5
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 6.0e-202 707.6 440 83.2
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 2.3e-201 705.7 443 81.9
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 3.9e-201 704.9 441 83.9
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 3.9e-201 704.9 442 82.8
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 8.6e-201 703.7 439 82.0
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 8.6e-201 703.7 443 83.1
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 4.3e-200 701.4 440 82.5
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 5.6e-200 701.0 439 82.7
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 7.3e-200 700.7 444 82.7
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 7.3e-200 700.7 439 83.6
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 9.5e-200 700.3 446 81.8
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 1.6e-199 699.5 439 82.7
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 3.6e-199 698.4 440 82.7
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 1.1e-198 696.8 441 81.9
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 3.1e-198 695.3 418 85.6
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 6.8e-198 694.1 441 82.5
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 1.2e-197 693.3 438 81.7
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 4.4e-197 691.4 442 81.7
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 9.9e-197 690.3 443 81.7
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 9.9e-197 690.3 439 81.1
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 9.9e-197 690.3 442 82.1
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 2.2e-196 689.1 445 81.3
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 1.1e-195 686.8 445 81.1
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 1.1e-195 686.8 439 81.8
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 1.9e-195 686.0 438 81.1
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 3.2e-195 685.3 442 81.7
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 9.2e-195 683.7 439 81.1
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 1.6e-194 682.9 443 81.3
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 2.1e-194 682.6 438 81.3
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 1.3e-193 679.9 439 79.7
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 2.3e-193 679.1 441 79.6
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 2.3e-193 679.1 404 85.9
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 3.9e-193 678.3 440 81.4
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 5.1e-193 677.9 439 80.0
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 3.3e-192 675.2 442 80.8
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 9.6e-192 673.7 439 80.2
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 9.6e-192 673.7 441 79.6
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.6e-191 672.9 399 85.0
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.6e-191 672.9 441 78.2
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 3.6e-191 671.8 440 80.2
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 3.6e-191 671.8 440 80.2
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 3.6e-191 671.8 399 84.7
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 3.6e-191 671.8 441 79.8
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 4.7e-191 671.4 447 79.9
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 4.7e-191 671.4 447 79.9
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 8.1e-191 670.6 439 79.5
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 8.1e-191 670.6 448 79.2
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 2.4e-190 669.1 439 80.0
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 3.1e-190 668.7 448 79.0
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 5.3e-190 667.9 408 84.3
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 1.5e-189 666.4 440 79.5
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 5.4e-187 657.9 440 79.8
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 1.6e-186 656.4 440 79.3
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 3.5e-186 655.2 408 82.6
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 3.5e-186 655.2 408 82.6
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.0e-185 653.7 448 78.3
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 2.3e-185 652.5 440 78.0
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 2.3e-185 652.5 440 78.0
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 1.5e-184 649.8 433 77.4
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 4.3e-184 648.3 483 72.5
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 5.6e-184 647.9 445 78.2
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 1.6e-183 646.4 381 84.8
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 2.8e-183 645.6 439 77.0
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 1.1e-182 643.7 416 80.0
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.4e-182 643.3 398 80.7
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 2.4e-182 642.5 420 79.0
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.6e-181 639.0 391 84.7
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 1.7e-180 636.3 438 75.1
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 2.9e-180 635.6 380 86.1
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 3.8e-180 635.2 431 75.6
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 8.4e-180 634.0 387 83.5
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 7.1e-179 630.9 496 68.5
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 3.5e-178 628.6 440 76.6
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 6.4e-172 607.8 440 74.3
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 7.9e-170 600.9 444 73.6
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 9.0e-166 587.4 369 84.3
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.0e-161 573.9 397 77.6
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 1.0e-156 557.4 372 73.4
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 2.5e-152 542.7 397 70.0
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 4.3e-152 542.0 307 90.2
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 1.7e-151 540.0 368 69.8
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 6.3e-151 538.1 362 79.6
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 2.4e-150 536.2 363 71.1
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 7.2e-147 524.6 370 70.5
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 2.3e-145 519.6 414 65.2
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 3.0e-145 519.2 362 69.3
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 3.9e-145 518.8 362 68.5
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 6.7e-145 518.1 375 67.2
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.7e-143 512.3 430 62.8
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.4e-142 510.4 430 62.8
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 9.1e-142 507.7 430 62.1
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 1.5e-141 506.9 361 71.2
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 3.6e-138 495.7 395 61.0
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 3.6e-138 495.7 417 60.0
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 4.8e-135 485.3 395 60.5
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 3.1e-134 482.6 317 78.9
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 1.3e-132 477.2 359 64.9
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.0e-116 424.5 365 61.4
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 8.3e-103 378.3 368 57.1
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 3.2e-94 349.7 302 61.9
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 4.1e-86 322.8 214 76.2
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 3.5e-69 266.5 186 77.4
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.9e-68 263.1 328 44.2
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 1.6e-61 241.1 197 62.9
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.1e-59 235.0 139 86.3
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 1.1e-59 235.0 123 89.4
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 9.0e-57 225.3 154 72.7
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 5.3e-41 172.9 162 54.9
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 1.7e-39 167.9 119 71.4
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 2.5e-35 154.1 111 74.8
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 2.6e-32 144.1 81 87.7
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 2.5e-30 137.5 82 85.4
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.3e-27 127.1 80 71.2
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 2.8e-26 124.0 112 57.1
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 5.2e-20 103.2 102 55.9
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 4.8e-18 96.7 51 84.3
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 5.9e-16 89.7 86 53.5
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 4.5e-08 63.5 35 85.7


User provided reference genes

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