Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 5.2e-88 327.8 178 100.0
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 8.1e-73 277.3 179 86.0
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 2.3e-72 275.8 179 84.4
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 1.2e-71 273.5 181 75.7
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.5e-71 273.1 179 82.1
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 9.9e-63 243.8 203 71.4
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.2e-62 242.7 178 77.0
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 3.5e-60 235.3 182 78.6
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 4.6e-60 235.0 188 73.4
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 1.7e-59 233.0 182 75.8
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 1.6e-57 226.5 179 72.6
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 4.9e-54 214.9 192 63.5
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 1.9e-53 213.0 192 66.7
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 5.4e-53 211.5 200 64.0
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 7.1e-53 211.1 192 69.8
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.2e-52 210.3 194 62.4
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 5.1e-51 204.9 193 64.8
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 4.3e-50 201.8 197 67.0
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 7.4e-50 201.1 200 65.0
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.6e-49 199.9 179 65.9
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 6.2e-49 198.0 199 62.3
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 8.1e-49 197.6 201 62.2
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 8.1e-49 197.6 200 62.5
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.4e-48 196.8 213 57.3
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.4e-48 196.8 213 57.3
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.4e-48 196.1 189 61.4
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 6.9e-48 194.5 184 63.0
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 6.9e-48 194.5 184 63.0
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 9.0e-48 194.1 221 54.3
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.2e-47 193.7 189 56.1
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 2.6e-47 192.6 189 64.0
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 3.4e-47 192.2 186 63.4
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.4e-47 192.2 177 62.1
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 5.8e-47 191.4 182 67.0
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.2e-46 189.5 178 64.6
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 3.8e-46 188.7 211 58.3
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 3.8e-46 188.7 188 60.6
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 6.4e-46 188.0 187 57.2
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 1.4e-45 186.8 199 61.8
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.4e-45 186.0 195 57.9
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 3.2e-45 185.7 195 64.6
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 4.2e-45 185.3 203 61.6
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 4.2e-45 185.3 214 55.6
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 2.1e-44 183.0 201 60.7
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 2.7e-44 182.6 198 58.6
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.7e-44 182.6 181 58.6
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 3.5e-44 182.2 223 50.7
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 7.9e-44 181.0 215 54.4
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.0e-43 180.6 192 61.5
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 1.3e-43 180.3 212 56.1
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 2.3e-43 179.5 204 56.4
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 3.0e-43 179.1 201 57.7
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 3.9e-43 178.7 190 60.0
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 1.9e-42 176.4 209 58.9
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 5.6e-42 174.9 241 50.6
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 5.6e-42 174.9 202 53.5
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 4.8e-41 171.8 202 58.4
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 4.8e-41 171.8 203 59.1
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 4.8e-41 171.8 197 59.4
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 1.1e-40 170.6 196 56.1
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 4.0e-40 168.7 199 59.3
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 9.0e-40 167.5 177 52.5
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 9.0e-40 167.5 228 53.9
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 9.0e-40 167.5 199 49.2
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 1.5e-39 166.8 208 54.8
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.0e-39 166.4 232 53.0
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 2.6e-39 166.0 175 56.0
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.4e-39 165.6 185 56.8
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.7e-38 163.3 184 51.1
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 2.2e-38 162.9 201 54.2
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 2.2e-38 162.9 189 51.3
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 2.9e-38 162.5 219 50.7
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.9e-38 162.5 182 57.7
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.8e-38 162.2 125 69.6
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 8.4e-38 161.0 185 57.3
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.1e-37 160.6 189 56.1
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 1.1e-37 160.6 175 52.6
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 1.1e-37 160.6 187 58.8
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 3.2e-37 159.1 204 53.4
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 3.2e-37 159.1 196 55.1
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 7.1e-37 157.9 178 52.2
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.1e-36 156.4 226 46.5
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 2.1e-36 156.4 203 51.2
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 3.5e-36 155.6 198 52.5
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 4.6e-36 155.2 171 58.5
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 4.6e-36 155.2 190 55.8
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 6.0e-36 154.8 196 52.6
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 1.0e-35 154.1 198 53.0
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 1.0e-35 154.1 184 49.5
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 1.0e-35 154.1 197 53.3
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-35 153.7 187 53.5
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 1.8e-35 153.3 238 45.0
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.8e-35 153.3 178 51.1
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 3.9e-35 152.1 189 55.0
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 5.1e-35 151.8 187 58.3
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 5.1e-35 151.8 183 54.1
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 8.7e-35 151.0 188 53.2
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-34 150.6 179 55.3
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-34 150.6 198 52.5
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-34 150.2 203 44.3
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-34 150.2 203 50.2
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 1.5e-34 150.2 203 50.2
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.5e-34 150.2 209 50.2
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 2.5e-34 149.4 179 54.2
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 4.3e-34 148.7 179 54.2
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 4.3e-34 148.7 179 54.2
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 7.4e-34 147.9 211 51.2
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 9.7e-34 147.5 179 48.0
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 9.7e-34 147.5 179 48.0
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 9.7e-34 147.5 199 53.3
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.6e-33 146.7 176 56.2
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 2.8e-33 146.0 191 51.8
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 4.8e-33 145.2 179 46.4
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 4.8e-33 145.2 197 51.8
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 6.3e-33 144.8 200 52.5
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 8.2e-33 144.4 202 51.0
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 1.4e-32 143.7 190 51.6
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 1.4e-32 143.7 200 46.5
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 2.4e-32 142.9 184 47.3
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 2.4e-32 142.9 186 52.2
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 3.1e-32 142.5 195 53.8
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 4.1e-32 142.1 179 53.6
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 5.3e-32 141.7 184 47.8
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 5.3e-32 141.7 203 49.8
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 5.3e-32 141.7 203 49.8
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 6.9e-32 141.4 211 49.3
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 6.9e-32 141.4 188 51.1
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 1.2e-31 140.6 159 52.2
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.5e-31 140.2 193 48.7
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 2.6e-31 139.4 188 53.2
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 2.6e-31 139.4 187 47.6
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 3.4e-31 139.0 184 48.9
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 4.5e-31 138.7 192 49.5
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 5.9e-31 138.3 189 52.4
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 7.6e-31 137.9 232 44.8
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 1.0e-30 137.5 184 47.3
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.0e-30 137.5 180 51.1
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 1.0e-30 137.5 188 51.6
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 2.9e-30 136.0 216 46.3
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 2.9e-30 136.0 210 49.5
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 2.9e-30 136.0 233 42.1
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 5.0e-30 135.2 170 50.0
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 6.5e-30 134.8 206 51.9
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 6.5e-30 134.8 213 42.7
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 1.9e-29 133.3 177 46.3
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 1.9e-29 133.3 177 46.3
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 1.9e-29 133.3 177 46.3
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 2.1e-28 129.8 177 48.6
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 2.7e-28 129.4 219 48.4
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 2.7e-28 129.4 203 40.9
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 7.9e-28 127.9 173 45.7
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 1.8e-27 126.7 185 47.0
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 3.0e-27 125.9 213 39.9
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 5.3e-24 115.2 212 42.0
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 1.0e-22 110.9 145 49.7
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 1.0e-22 110.9 145 50.3
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 1.0e-22 110.9 145 49.7
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 1.0e-22 110.9 145 50.3
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 1.2e-20 104.0 181 37.0
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 7.9e-20 101.3 111 50.5
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 2.3e-19 99.8 187 43.9
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.9e-19 99.0 187 43.3
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.1e-18 97.4 187 42.8
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.3e-18 95.9 203 33.5
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 4.8e-17 92.0 113 54.0
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 3.1e-16 89.4 145 44.8
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 9.1e-16 87.8 158 36.7
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 6.5e-14 81.6 120 40.0
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 5.5e-13 78.6 120 37.5
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 5.5e-13 78.6 215 27.4
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 3.9e-11 72.4 44 65.9
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 2.6e-10 69.7 88 46.6
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.7e-09 67.0 35 77.1
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 2.2e-09 66.6 116 34.5
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 2.8e-09 66.2 123 32.5
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 1.8e-08 63.5 140 29.3
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 7.0e-08 61.6 40 67.5
Lalb_Chr22g0349911 Lupinus albus HOM05D003968 ORTHO05D004077 1.6e-07 60.5 69 59.4
SEGI_14851 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 7.7e-07 58.2 118 31.4
SEGI_34313 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 1.3e-06 57.4 119 30.3
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 1.7e-06 57.0 119 27.7
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 2.2e-06 56.6 133 28.6
SEGI_09126 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 3.8e-06 55.8 115 28.7
MBI01_g34424_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 5.0e-06 55.5 148 27.7


User provided reference genes

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