Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 3.4e-79 298.1 135 100.0
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 5.4e-69 264.2 135 85.9
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 9.2e-69 263.5 135 86.7
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 1.2e-68 263.1 135 85.9
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.1e-66 256.5 135 83.0
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 1.1e-66 256.5 135 82.2
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.9e-66 255.8 135 81.5
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 2.1e-65 252.3 135 83.0
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 6.1e-65 250.8 148 75.0
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 6.1e-65 250.8 135 78.5
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 8.0e-65 250.4 134 79.9
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.4e-64 249.6 147 76.9
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 1.8e-64 249.2 135 80.0
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 1.8e-64 249.2 147 75.5
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 4.0e-64 248.1 135 80.0
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 4.0e-64 248.1 135 80.0
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 4.4e-63 244.6 135 78.5
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 5.7e-63 244.2 135 80.7
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 7.5e-63 243.8 150 74.7
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 9.8e-63 243.4 145 75.9
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.3e-62 243.0 152 72.4
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 1.7e-62 242.7 135 79.3
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 3.7e-62 241.5 135 78.5
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 4.9e-62 241.1 135 78.5
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 6.4e-62 240.7 135 76.3
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.1e-61 240.0 153 71.2
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 3.2e-61 238.4 135 77.8
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.4e-61 237.7 135 75.6
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 2.0e-60 235.7 148 71.6
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 2.7e-60 235.3 146 71.9
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.7e-60 235.3 153 70.6
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 4.6e-60 234.6 135 75.6
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 7.8e-60 233.8 131 79.4
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.0e-59 233.4 135 74.1
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 1.0e-59 233.4 122 81.1
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 1.0e-59 233.4 135 76.3
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 1.0e-59 233.4 130 78.5
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 1.7e-59 232.6 135 73.3
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 1.7e-59 232.6 135 74.1
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 2.3e-59 232.3 133 74.4
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.3e-59 232.3 135 73.3
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 3.0e-59 231.9 148 69.6
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 6.6e-59 230.7 135 77.0
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 8.6e-59 230.3 122 82.8
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 1.1e-58 229.9 159 65.4
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.5e-58 229.6 145 70.3
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 2.5e-58 228.8 135 72.6
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 3.3e-58 228.4 142 71.8
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 4.3e-58 228.0 130 77.7
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 4.3e-58 228.0 132 77.3
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 5.6e-58 227.6 150 68.7
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 7.3e-58 227.3 135 71.9
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 7.3e-58 227.3 135 71.9
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 9.5e-58 226.9 137 72.3
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 9.5e-58 226.9 137 72.3
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 9.5e-58 226.9 137 72.3
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 1.2e-57 226.5 147 68.7
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 2.1e-57 225.7 135 71.9
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 2.1e-57 225.7 135 71.9
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 2.8e-57 225.3 153 66.0
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 3.6e-57 224.9 135 71.9
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 6.2e-57 224.2 122 79.5
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.4e-56 223.0 159 64.2
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 1.8e-56 222.6 135 71.1
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 3.1e-56 221.9 147 65.3
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 4.0e-56 221.5 121 79.3
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 4.0e-56 221.5 135 70.4
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 5.2e-56 221.1 148 66.9
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 1.2e-55 219.9 135 70.4
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 1.5e-55 219.5 135 69.6
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 1.5e-55 219.5 126 77.0
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 1.5e-55 219.5 126 77.0
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 2.0e-55 219.2 136 70.6
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 2.6e-55 218.8 149 66.4
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 3.4e-55 218.4 136 70.6
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 3.4e-55 218.4 136 70.6
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 3.4e-55 218.4 147 63.9
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.4e-55 218.4 131 74.0
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 3.4e-55 218.4 136 72.1
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 3.4e-55 218.4 141 66.7
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 4.4e-55 218.0 135 69.6
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 4.4e-55 218.0 130 73.1
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 5.8e-55 217.6 131 72.5
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 5.8e-55 217.6 130 72.3
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 5.8e-55 217.6 131 74.0
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 5.8e-55 217.6 153 64.1
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 5.8e-55 217.6 153 64.1
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 9.8e-55 216.9 135 68.9
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 1.7e-54 216.1 122 76.2
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.7e-54 216.1 133 70.7
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.7e-54 216.1 131 73.3
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.9e-54 215.3 149 62.4
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 2.9e-54 215.3 122 74.6
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.9e-53 212.6 126 72.2
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 4.1e-53 211.5 122 73.0
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 5.4e-53 211.1 145 64.1
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 1.6e-52 209.5 135 68.1
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 1.6e-52 209.5 122 72.1
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 2.0e-52 209.1 126 73.0
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 6.0e-52 207.6 129 73.6
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 3.0e-51 205.3 142 65.5
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 1.1e-50 203.4 129 70.5
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 1.9e-50 202.6 123 72.4
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 6.2e-49 197.6 154 60.4
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.4e-48 196.4 149 59.7
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 2.0e-47 192.6 143 60.1
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 4.9e-46 188.0 112 71.4
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 4.9e-46 188.0 112 71.4
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 2.7e-44 182.2 123 65.9
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 2.1e-41 172.6 159 51.6
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 1.8e-40 169.5 173 49.7
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 2.3e-40 169.1 105 70.5
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.6e-36 156.4 119 53.8
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 7.8e-36 154.1 113 59.3
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 5.1e-35 151.4 87 78.2
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 1.5e-34 149.8 136 50.0
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 3.3e-34 148.7 118 52.5
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 3.4e-31 138.7 144 46.5
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 4.9e-30 134.8 72 80.6
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 4.3e-26 121.7 59 88.1
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 2.4e-24 115.9 58 81.0
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 7.4e-18 94.4 114 46.5
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.4e-16 89.4 53 69.8
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.0e-16 88.6 81 54.3
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 9.0e-16 87.4 105 43.8
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 5.8e-15 84.7 80 52.5
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 7.6e-15 84.3 80 52.5
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 6.4e-14 81.3 74 48.6
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 1.1e-13 80.5 112 37.5
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 1.6e-12 76.6 111 39.6
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 8.7e-11 70.9 50 60.0
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 2.5e-10 69.3 75 48.0
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 3.3e-10 68.9 78 42.3
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 3.3e-10 68.9 102 35.3
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 2.8e-09 65.9 49 53.1
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 3.1e-08 62.4 47 51.1
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.5e-07 60.1 47 51.1
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 2.0e-07 59.7 46 50.0
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 2.0e-07 59.7 46 50.0
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 7.6e-07 57.8 53 49.1


User provided reference genes

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