Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G106900 Carya illinoinensis HOM05D006885 ORTHO05D008606 1.1e-44 183.0 91 100.0
CiPaw.05G104600 Carya illinoinensis HOM05D006885 ORTHO05D008606 3.5e-32 141.4 78 89.7
Cfa008736 Carpinus fangiana HOM05D000120 ORTHO05D000068 1.5e-30 136.0 78 87.2
Hma1.2p1_0459F.1_g157320 Hydrangea macrophylla HOM05D006885 ORTHO05D008606 6.2e-29 130.6 74 86.5
Manes.11G080000 Manihot esculenta HOM05D006885 ORTHO05D008606 6.2e-29 130.6 79 82.3
Prupe.1G220300 Prunus persica HOM05D006885 ORTHO05D008606 2.4e-28 128.6 78 80.8
Ciclev10033198m.g Citrus clementina HOM05D006885 ORTHO05D008606 6.9e-28 127.1 78 82.1
Atru.chr11.2397 Acer truncatum HOM05D006885 ORTHO05D008606 1.5e-27 125.9 75 82.7
Eucgr.B03538 Eucalyptus grandis HOM05D006885 ORTHO05D008606 2.6e-27 125.2 77 77.9
Sabra16G0207500 Salix brachista HOM05D006885 ORTHO05D008606 3.4e-27 124.8 72 84.7
RcHm_v2.0_Chr4g0429451 Rosa chinensis HOM05D006885 ORTHO05D008606 4.5e-27 124.4 65 90.8
Dinv33305 Davidia involucrata HOM05D006885 ORTHO05D008606 7.6e-27 123.6 75 82.7
MD13G1125100 Malus domestica HOM05D006885 ORTHO05D008606 1.0e-26 123.2 78 80.8
Potri.001G325000 Populus trichocarpa HOM05D006885 ORTHO05D008606 1.0e-26 123.2 72 83.3
Haze_11752 Corylus avellana HOM05D006885 ORTHO05D008606 1.3e-26 122.9 111 63.1
MD16G1125900 Malus domestica HOM05D006885 ORTHO05D008606 1.7e-26 122.5 78 79.5
TAR629G2182 Trochodendron aralioides HOM05D006885 ORTHO05D008606 2.2e-26 122.1 74 83.8
ClCG06G001860 Citrullus lanatus HOM05D006885 ORTHO05D008606 3.8e-26 121.3 64 89.1
FvH4_4g23120 Fragaria vesca HOM05D006885 ORTHO05D008606 3.8e-26 121.3 64 89.1
FAN07G1762 Fragaria x ananassa HOM05D006885 ORTHO05D008606 3.8e-26 121.3 64 89.1
FAN12G2334 Fragaria x ananassa HOM05D006885 ORTHO05D008606 3.8e-26 121.3 64 89.1
FAN17G2783 Fragaria x ananassa HOM05D006885 ORTHO05D008606 3.8e-26 121.3 64 89.1
Actinidia19564 Actinidia chinensis HOM05D006885 ORTHO05D008606 6.5e-26 120.6 71 83.1
Aqoxy5G03235 Aquilegia oxysepala HOM05D006885 ORTHO05D008606 6.5e-26 120.6 78 76.9
TWI75G1759 Tripterygium wilfordii HOM05D006885 ORTHO05D008606 6.5e-26 120.6 79 74.7
Ca_06520_v3 Cicer arietinum L. HOM05D006885 ORTHO05D008606 8.4e-26 120.2 71 83.1
Manes.04G090052 Manihot esculenta HOM05D006885 ORTHO05D008606 8.4e-26 120.2 78 76.9
TPR.G15605 Trifolium pratense HOM05D006885 ORTHO05D008606 1.1e-25 119.8 68 83.8
Nn2g15930 Nelumbo nucifera HOM05D006885 ORTHO05D008606 1.4e-25 119.4 73 79.5
Dinv25633 Davidia involucrata HOM05D006885 ORTHO05D008606 1.9e-25 119.0 76 77.6
Sed0025765 Sechium edule HOM05D006885 ORTHO05D008606 1.9e-25 119.0 64 84.4
CANSAT01G1896 Cannabis sativa HOM05D006885 ORTHO05D008606 2.5e-25 118.6 63 88.9
CsaV3_6G007910 Cucumis sativus L. HOM05D006885 ORTHO05D008606 2.5e-25 118.6 64 87.5
ECA232G0525 Erigeron canadensis HOM05D006885 ORTHO05D008606 2.5e-25 118.6 74 77.0
PGR119G0226 Punica granatum HOM05D006885 ORTHO05D008606 3.2e-25 118.2 75 77.3
Duzib052G0936 Durio zibethinus HOM05D006885 ORTHO05D008606 5.5e-25 117.5 71 81.7
Lsat_1_v5_gn_4_1780 Lactuca sativa HOM05D006885 ORTHO05D008606 5.5e-25 117.5 64 85.9
LjContig00312_ERROPOS870357g0004846 Lotus japonicus HOM05D006885 ORTHO05D008606 7.1e-25 117.1 78 74.4
AUR62028871 Chenopodium quinoa HOM05D006885 ORTHO05D008606 1.2e-24 116.3 74 73.0
Gohir.D04G140400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.2e-24 116.3 63 87.3
Gorai.012G125400 Gossypium raimondii HOM05D006885 ORTHO05D008606 1.2e-24 116.3 63 87.3
AUR62005687 Chenopodium quinoa HOM05D006885 ORTHO05D008606 1.6e-24 115.9 74 73.0
Lj6A834T26 Lonicera japonica HOM05D006885 ORTHO05D008606 1.6e-24 115.9 77 75.3
Duzib248G1150 Durio zibethinus HOM05D006885 ORTHO05D008606 2.1e-24 115.5 72 79.2
Gohir.A04G101300 Gossypium hirsutum HOM05D006885 ORTHO05D008606 2.7e-24 115.2 78 75.6
Peaxi162Scf00962g00024 Petunia axillaris HOM05D006885 ORTHO05D008606 3.5e-24 114.8 76 76.3
Medtr3g074700 Medicago truncatula HOM05D006885 ORTHO05D008606 4.6e-24 114.4 68 79.4
Nitab4.5_0000913g0010 Nicotiana tabacum HOM05D006885 ORTHO05D008606 4.6e-24 114.4 64 85.9
Oeu011334.1 Olea europaea HOM05D006885 ORTHO05D008606 4.6e-24 114.4 59 91.5
PGSC0003DMG400011888 Solanum tuberosum HOM05D006885 ORTHO05D008606 4.6e-24 114.4 61 90.2
Cc11_g17420 Coffea canephora HOM05D006885 ORTHO05D008606 7.9e-24 113.6 75 77.3
MSTRG.471 Avicennia marina HOM05D006885 ORTHO05D008606 1.0e-23 113.2 63 87.3
CAN.G1264.4 Capsicum annuum HOM05D006885 ORTHO05D008606 1.0e-23 113.2 76 76.3
Oeu044483.1 Olea europaea HOM05D006885 ORTHO05D008606 1.3e-23 112.8 57 93.0
Phvul.008G000900 Phaseolus vulgaris HOM05D006885 ORTHO05D008606 1.8e-23 112.5 56 92.9
Psat0s1880g0200 Pisum sativum HOM05D006885 ORTHO05D008606 1.8e-23 112.5 68 79.4
Sopen01g005380 Solanum pennellii HOM05D006885 ORTHO05D008606 1.8e-23 112.5 61 88.5
Thecc.02G198000 Theobroma cacao HOM05D006885 ORTHO05D008606 1.8e-23 112.5 76 77.6
Migut.K00992 Erythranthe guttata HOM05D006885 ORTHO05D008606 3.9e-23 111.3 75 76.0
PSO017G7113 Papaver somniferum HOM05D006885 ORTHO05D008606 1.5e-22 109.4 78 70.5
GSVIVG01000942001 Vitis vinifera HOM05D006885 ORTHO05D008606 1.5e-22 109.4 62 85.5
Glyma.08G361800 Glycine max HOM05D006885 ORTHO05D008606 2.5e-22 108.6 60 86.7
Thhalv10009236m.g Eutrema salsugineum HOM05D006885 ORTHO05D008606 3.3e-22 108.2 64 81.2
THA.LOC104825479 Tarenaya hassleriana HOM05D006885 ORTHO05D008606 3.3e-22 108.2 61 88.5
CARHR027030 Cardamine hirsuta HOM05D006885 ORTHO05D008606 7.4e-22 107.1 75 68.0
DCAR_024641 Daucus carota HOM05D006885 ORTHO05D008606 7.4e-22 107.1 61 80.3
Glyma.18G300000 Glycine max HOM05D006885 ORTHO05D008606 9.7e-22 106.7 69 82.6
BcaB03g13983 Brassica carinata HOM05D006885 ORTHO05D008606 1.6e-21 105.9 87 63.2
C03p73770 Brassica napus HOM05D006885 ORTHO05D008606 1.6e-21 105.9 66 75.8
Aa31LG7G9990 Aethionema arabicum HOM05D006885 ORTHO05D008606 2.2e-21 105.5 71 74.6
Carub.0001s2598 Capsella rubella HOM05D006885 ORTHO05D008606 2.2e-21 105.5 80 68.8
unitig_26.g10421 Utricularia gibba HOM05D006885 ORTHO05D008606 2.2e-21 105.5 64 79.7
AL1G40850 Arabidopsis lyrata HOM05D006885 ORTHO05D008606 3.7e-21 104.8 80 67.5
Sp1g23670 Schrenkiella parvula HOM05D006885 ORTHO05D008606 3.7e-21 104.8 80 68.8
AT1G27435 Arabidopsis thaliana HOM05D006885 ORTHO05D008606 6.3e-21 104.0 69 73.9
BcaC01g01613 Brassica carinata HOM05D006885 ORTHO05D008606 8.2e-21 103.6 66 74.2
BcaC01g06952 Brassica carinata HOM05D006885 ORTHO05D008606 8.2e-21 103.6 86 59.3
A08p26290 Brassica napus HOM05D006885 ORTHO05D008606 8.2e-21 103.6 66 74.2
BolC3t19669H Brassica oleracea HOM05D006885 ORTHO05D008606 8.2e-21 103.6 66 74.2
BraA08t34580Z Brassica rapa HOM05D006885 ORTHO05D008606 8.2e-21 103.6 66 74.2
SalBow2G1383 Salvia bowleyana HOM05D006885 ORTHO05D008606 8.2e-21 103.6 75 69.3
BcaC06g35293 Brassica carinata HOM05D006885 ORTHO05D008606 1.1e-20 103.2 58 84.5
C07p17740 Brassica napus HOM05D006885 ORTHO05D008606 1.1e-20 103.2 58 84.5
BolC7t42280H Brassica oleracea HOM05D006885 ORTHO05D008606 1.1e-20 103.2 58 84.5
BraA07t28960Z Brassica rapa HOM05D006885 ORTHO05D008606 2.4e-20 102.1 58 82.8
A07p11750 Brassica napus HOM05D006885 ORTHO05D008606 3.1e-20 101.7 55 85.5
Lalb_Chr10g0091171 Lupinus albus HOM05D006885 ORTHO05D008606 5.3e-20 100.9 55 87.3
EL10Ac6g13573 Beta vulgaris HOM05D006885 ORTHO05D008606 6.9e-20 100.5 66 74.2
HPP92_021686 Vanilla planifolia HOM05D006885 ORTHO05D008606 6.9e-20 100.5 70 64.3
HPP92_021628 Vanilla planifolia HOM05D006885 ORTHO05D008606 5.9e-19 97.4 70 62.9
CDE05G1244 Ceratophyllum demersum HOM05D006885 ORTHO05D008606 5.0e-18 94.4 61 77.0
SGA_v2.0_scaffold9G04792 Striga asiatica HOM05D006885 ORTHO05D008606 5.0e-18 94.4 105 51.4
Zm00001eb133070 Zea mays HOM05D006885 ORTHO05D008606 5.0e-18 94.4 67 64.2
Dinv09126 Davidia involucrata HOM05D006885 ORTHO05D008606 8.5e-18 93.6 50 88.0
ATR0582G111 Amborella trichopoda HOM05D006885 ORTHO05D008606 1.1e-17 93.2 61 80.3
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.1e-17 93.2 61 73.8
QL03p050754 Quercus lobata HOM05D006885 ORTHO05D008606 1.4e-17 92.8 44 97.7
Zm00001eb408880 Zea mays HOM05D006885 ORTHO05D008606 2.5e-17 92.0 65 66.2
MELO3C035240.2 Cucumis melo HOM05D006885 ORTHO05D008606 4.2e-17 91.3 49 85.7
CSS0038255 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 7.2e-17 90.5 44 95.5
SHI04153 Sapria himalayana HOM05D006885 ORTHO05D008606 7.2e-17 90.5 61 75.4
Sc11g0000250 Simmondsia chinensis HOM05D006885 ORTHO05D008606 4.6e-16 87.8 42 95.2
Hund25491 Selenicereus undatus HOM05D006885 ORTHO05D008606 6.1e-16 87.4 44 90.9
Ah.03g135790 Amaranthus hybridus HOM05D006885 ORTHO05D008606 1.0e-15 86.7 44 88.6
HanXRQChr03g0067371 Helianthus annuus HOM05D006885 ORTHO05D008606 1.4e-15 86.3 45 86.7
MBI12_g28748_MAGBIO Magnolia biondii HOM05D006885 ORTHO05D008606 5.7e-14 80.9 55 70.9
Gorai.001G210600 Gossypium raimondii HOM05D006885 ORTHO05D008606 1.1e-12 76.6 53 71.7
CSS0039361 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 2.4e-12 75.5 37 94.6
Gohir.D07G189020 Gossypium hirsutum HOM05D006885 ORTHO05D008606 3.1e-12 75.1 53 69.8
Pp3c6_10000 Physcomitrium patens HOM05D006885 ORTHO05D008606 2.9e-10 68.6 64 59.4
TPR.G7690 Trifolium pratense HOM05D006885 ORTHO05D008606 8.5e-10 67.0 30 96.7
Gohir.A06G101502 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.4e-09 66.2 46 65.2
Gohir.D02G113400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.6e-08 62.8 34 82.4
Gorai.005G128300 Gossypium raimondii HOM05D006885 ORTHO05D008606 1.6e-08 62.8 34 82.4
AagrBONN_evm.TU.Sc2ySwM_362.2152 Anthoceros agrestis HOM05D006885 ORTHO05D008606 5.1e-07 57.8 70 50.0
Mapoly0027s0032 Marchantia polymorpha HOM05D006885 ORTHO05D008606 3.3e-06 55.1 54 57.4


User provided reference genes

Program Settings