Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 2.9e-260 901.4 447 100.0
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 4.2e-227 791.2 446 86.1
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 1.2e-226 789.6 471 82.8
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 4.3e-216 754.6 447 82.6
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 9.7e-216 753.4 446 81.6
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 1.3e-215 753.1 457 80.3
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 1.6e-215 752.7 447 81.7
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 6.3e-215 750.7 446 82.1
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 4.1e-214 748.0 446 80.9
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 6.9e-214 747.3 448 80.6
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 2.6e-213 745.3 447 81.0
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 5.0e-212 741.1 447 80.3
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 6.5e-212 740.7 446 81.8
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 2.5e-211 738.8 447 80.5
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 3.2e-211 738.4 447 80.5
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 3.2e-211 738.4 446 80.3
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 4.2e-211 738.0 446 81.6
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 4.2e-211 738.0 448 79.9
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 2.7e-210 735.3 446 80.3
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 6.1e-210 734.2 447 79.0
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 6.1e-210 734.2 448 78.3
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 3.9e-209 731.5 447 79.6
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 1.1e-208 729.9 447 79.9
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 1.5e-208 729.6 447 78.5
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 7.4e-208 727.2 447 78.1
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 9.7e-208 726.9 448 79.5
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 1.3e-207 726.5 447 79.4
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 2.8e-207 725.3 449 78.0
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 6.3e-207 724.2 449 78.4
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 2.4e-206 722.2 454 76.7
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 2.4e-206 722.2 445 78.2
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 2.6e-205 718.8 446 78.0
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 3.4e-205 718.4 473 76.1
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 7.7e-205 717.2 434 80.4
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 2.9e-204 715.3 446 77.8
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 5.0e-204 714.5 413 82.6
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 6.5e-204 714.1 449 76.8
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.4e-203 713.0 439 77.9
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.4e-203 713.0 439 77.7
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 3.2e-203 711.8 452 77.2
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 4.2e-203 711.4 439 78.1
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 5.5e-203 711.1 439 77.7
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 7.2e-203 710.7 449 76.4
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 1.2e-202 709.9 447 78.3
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 1.6e-202 709.5 447 77.6
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 4.7e-202 708.0 448 75.9
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 8.8e-201 703.7 435 77.9
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 1.5e-200 703.0 452 75.2
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 2.0e-200 702.6 452 75.2
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 3.3e-200 701.8 477 72.1
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 4.4e-200 701.4 435 77.7
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 8.2e-199 697.2 430 78.4
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 1.1e-198 696.8 432 77.3
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 3.1e-198 695.3 435 77.0
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 3.4e-197 691.8 448 73.0
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 5.9e-197 691.0 446 73.5
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 7.7e-197 690.6 466 72.7
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 2.2e-196 689.1 435 76.6
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 2.9e-196 688.7 447 73.4
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 2.9e-196 688.7 434 75.3
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 8.5e-196 687.2 449 75.9
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 1.4e-195 686.4 434 75.1
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 4.2e-195 684.9 447 72.5
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 2.7e-194 682.2 446 76.2
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 4.7e-194 681.4 446 72.2
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 3.0e-193 678.7 448 71.2
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 5.2e-193 677.9 448 74.6
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 8.8e-193 677.2 446 72.4
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 7.4e-192 674.1 467 69.8
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 1.3e-191 673.3 446 72.2
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 1.7e-191 672.9 450 72.9
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 2.8e-191 672.2 459 70.6
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 4.8e-191 671.4 450 72.4
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 6.3e-191 671.0 430 73.7
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 1.4e-190 669.8 435 72.4
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 1.8e-190 669.5 448 70.8
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 4.1e-190 668.3 448 70.5
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 1.2e-189 666.8 448 69.9
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 1.2e-189 666.8 448 72.3
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 3.5e-189 665.2 454 69.8
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 1.0e-188 663.7 463 71.9
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 1.3e-188 663.3 448 69.9
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 3.8e-188 661.8 448 70.1
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 8.5e-188 660.6 449 69.9
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 2.5e-187 659.1 405 77.8
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 4.2e-187 658.3 499 68.1
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 1.2e-186 656.8 457 70.2
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 2.1e-186 656.0 468 67.3
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 3.6e-186 655.2 465 71.4
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 4.7e-186 654.8 477 66.5
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 1.5e-184 649.8 452 71.2
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 2.6e-184 649.0 432 73.4
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 5.3e-182 641.3 481 65.9
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 3.5e-181 638.6 409 77.0
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 4.5e-181 638.3 409 76.5
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 3.0e-177 625.5 459 65.4
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 2.9e-172 609.0 446 68.4
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 5.5e-171 604.7 371 78.4
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 3.6e-170 602.1 412 69.4
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 7.5e-168 594.3 385 72.5
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 1.8e-166 589.7 453 64.0
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 3.1e-166 589.0 448 66.3
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 3.1e-166 589.0 461 65.5
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 2.7e-157 559.3 428 62.4
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 2.5e-155 552.7 442 59.7
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 5.6e-155 551.6 430 60.0
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 2.2e-151 539.7 322 80.4
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 1.6e-149 533.5 426 60.8
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 3.5e-149 532.3 431 58.7
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 4.7e-130 468.8 273 79.5
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 8.1e-130 468.0 454 56.2
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 1.7e-119 433.7 446 54.5
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 5.3e-113 412.1 434 46.8
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 1.6e-106 390.6 425 48.0
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 3.8e-103 379.4 370 57.3
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 1.6e-101 374.0 317 62.5
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 2.8e-90 336.7 477 39.8
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 1.9e-86 323.9 181 83.4
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 5.9e-64 249.2 337 44.8
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 1.7e-58 231.1 172 70.3
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 8.6e-55 218.8 108 91.7
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 2.3e-52 210.7 367 37.9
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 1.2e-48 198.4 123 79.7
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 2.5e-46 190.7 124 77.4
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 7.3e-46 189.1 390 35.1
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 7.5e-35 152.5 137 57.7
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 6.6e-31 139.4 100 66.0
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 6.8e-28 129.4 82 68.3
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 3.4e-27 127.1 127 52.8
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 3.0e-23 114.0 83 67.5
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 7.3e-22 109.4 67 70.1
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 9.6e-22 109.0 104 57.7
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 1.1e-20 105.5 192 31.2
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 5.8e-19 99.8 71 67.6
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 1.3e-18 98.6 70 68.6
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 1.7e-18 98.2 101 56.4
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 5.4e-17 93.2 67 65.7
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 2.5e-14 84.3 56 73.2


User provided reference genes

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