Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 9.4e-113 410.2 209 100.0
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 5.9e-91 337.8 209 86.1
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 5.5e-89 331.3 211 84.8
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 4.1e-84 315.1 210 81.0
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 5.0e-82 308.1 260 67.7
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 5.0e-82 308.1 210 79.0
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 5.5e-81 304.7 210 78.6
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 2.1e-80 302.8 210 78.1
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 1.8e-79 299.7 212 75.9
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 8.9e-79 297.4 209 78.5
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 3.4e-78 295.4 211 76.8
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 9.8e-78 293.9 214 76.2
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 6.3e-77 291.2 219 74.9
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 2.0e-75 286.2 224 72.3
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 2.7e-75 285.8 212 73.1
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 3.5e-75 285.4 217 72.4
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 3.5e-75 285.4 210 74.3
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 4.5e-75 285.0 213 74.6
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 4.5e-75 285.0 213 74.6
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 2.3e-74 282.7 209 74.2
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 5.6e-73 278.1 216 73.1
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 5.6e-73 278.1 216 72.7
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 4.7e-72 275.0 218 71.1
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 8.0e-72 274.2 216 72.2
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 1.0e-71 273.9 214 72.0
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 1.4e-71 273.5 210 71.9
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 2.3e-71 272.7 233 67.4
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 4.0e-71 271.9 232 67.2
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 2.6e-70 269.2 229 68.1
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 5.8e-70 268.1 212 70.3
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 9.8e-70 267.3 215 67.0
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 2.9e-69 265.8 211 69.7
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 3.7e-69 265.4 223 67.7
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 4.9e-69 265.0 227 67.8
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 1.4e-68 263.5 209 70.3
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 2.4e-68 262.7 210 70.5
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 2.4e-68 262.7 210 70.5
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 3.2e-68 262.3 208 70.7
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 4.1e-68 261.9 209 69.9
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 4.1e-68 261.9 215 70.2
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 7.0e-68 261.2 212 69.8
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 1.2e-67 260.4 209 68.9
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 2.0e-67 259.6 204 69.1
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 2.7e-67 259.2 217 67.3
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 4.6e-67 258.5 214 68.2
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 7.8e-67 257.7 221 67.0
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 1.0e-66 257.3 162 85.8
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.3e-66 256.9 160 81.9
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 3.9e-66 255.4 212 69.3
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 5.0e-66 255.0 196 74.0
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 5.0e-66 255.0 216 67.1
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 6.6e-66 254.6 209 68.4
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 6.6e-66 254.6 220 66.4
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 8.6e-66 254.2 251 59.8
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 1.1e-65 253.8 213 69.0
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 1.5e-65 253.4 192 72.9
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.5e-65 253.4 222 66.7
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 1.9e-65 253.1 219 66.2
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 2.5e-65 252.7 214 66.8
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 2.5e-65 252.7 161 81.4
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 2.5e-65 252.7 164 81.1
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 7.3e-65 251.1 211 66.4
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 7.3e-65 251.1 218 64.7
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 9.5e-65 250.8 214 63.6
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 1.2e-64 250.4 216 67.1
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 2.1e-64 249.6 237 62.4
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 4.7e-64 248.4 220 65.9
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 8.0e-64 247.7 213 68.5
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 1.1e-63 247.3 218 65.1
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 2.3e-63 246.1 222 63.1
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 5.2e-63 245.0 214 65.4
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 1.2e-62 243.8 149 83.2
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 1.5e-62 243.4 231 63.6
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 2.0e-62 243.0 221 62.9
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 2.0e-62 243.0 217 64.5
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 2.0e-62 243.0 170 75.9
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 3.4e-62 242.3 214 64.0
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 3.4e-62 242.3 210 63.8
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 9.8e-62 240.7 214 65.0
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 9.8e-62 240.7 212 64.2
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 9.8e-62 240.7 212 64.6
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 1.3e-61 240.4 214 64.0
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 2.2e-61 239.6 215 64.2
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 2.2e-61 239.6 215 64.2
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 2.2e-61 239.6 214 64.0
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 6.4e-61 238.0 215 63.7
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 6.4e-61 238.0 214 63.6
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 6.4e-61 238.0 214 62.1
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 6.4e-61 238.0 154 82.5
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 8.3e-61 237.7 201 69.7
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 3.2e-60 235.7 214 61.7
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 5.4e-60 235.0 197 68.0
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 9.2e-60 234.2 212 61.8
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 2.7e-59 232.6 215 61.4
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 3.5e-59 232.3 190 65.8
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 7.8e-59 231.1 185 69.7
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 1.7e-58 229.9 214 62.6
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 2.3e-58 229.6 200 63.0
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 6.6e-58 228.0 219 62.1
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 6.6e-58 228.0 158 76.6
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.5e-57 226.9 197 64.0
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 2.5e-57 226.1 130 87.7
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 3.3e-57 225.7 209 60.8
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 7.3e-57 224.6 194 67.5
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.2e-56 223.8 210 63.3
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 4.7e-56 221.9 209 63.6
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.1e-55 220.7 289 49.8
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 7.5e-54 214.5 137 78.8
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 1.9e-52 209.9 120 86.7
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 1.9e-52 209.9 174 67.8
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 7.1e-52 208.0 189 65.6
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.2e-51 207.2 147 72.8
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 1.2e-51 207.2 160 66.9
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 2.1e-51 206.5 144 72.2
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 4.6e-51 205.3 170 62.9
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 7.8e-51 204.5 196 60.2
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 3.9e-50 202.2 196 58.7
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 5.1e-50 201.8 145 70.3
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 8.6e-50 201.1 210 57.6
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 5.6e-49 198.4 184 62.5
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 7.3e-49 198.0 215 56.7
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 7.3e-49 198.0 186 58.1
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 7.3e-49 198.0 212 50.9
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 6.2e-48 194.9 172 65.1
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 6.8e-47 191.4 195 58.5
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 5.8e-46 188.3 212 53.8
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 1.1e-44 184.1 168 64.9
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 3.2e-44 182.6 133 67.7
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 3.0e-42 176.0 166 63.3
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.1e-41 174.1 200 52.0
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 1.1e-41 174.1 137 66.4
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 1.5e-41 173.7 133 65.4
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 5.6e-41 171.8 108 83.3
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 7.3e-41 171.4 158 62.7
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 1.3e-40 170.6 116 75.9
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 1.6e-40 170.2 210 50.5
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 8.1e-40 167.9 146 67.1
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 1.1e-39 167.5 160 56.2
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 4.0e-39 165.6 130 66.2
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 1.5e-38 163.7 159 62.9
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 4.4e-38 162.2 193 51.8
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 4.9e-37 158.7 137 61.3
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 1.6e-35 153.7 133 57.1
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 1.8e-26 123.6 224 39.3
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 5.6e-25 118.6 132 47.0
RcHm_v2.0_Chr3g0491761 Rosa chinensis HOM05D002231 ORTHO05D006103 3.8e-21 105.9 62 87.1
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.9e-20 103.6 98 64.3
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 1.5e-17 94.0 146 38.4
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 1.6e-16 90.5 88 54.5
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 6.2e-16 88.6 116 37.9
Cpa.g.sc43.61 Carica papaya HOM05D002231 ORTHO05D006103 1.3e-10 70.9 100 48.0
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 5.1e-10 68.9 51 64.7
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 7.4e-09 65.1 35 94.3
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 1.6e-08 63.9 39 74.4


User provided reference genes

Program Settings