Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 1.3e-257 892.5 445 100.0
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 2.7e-226 788.5 443 86.5
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 3.0e-225 785.0 442 86.9
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 2.4e-222 775.4 440 85.5
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 3.4e-221 771.5 440 85.2
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 6.2e-215 750.7 440 82.7
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 3.4e-213 745.0 442 80.8
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 7.6e-213 743.8 442 81.2
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 4.9e-212 741.1 442 80.1
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 1.1e-211 740.0 442 80.5
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 3.5e-210 734.9 437 80.8
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 1.0e-209 733.4 442 79.9
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 2.3e-209 732.3 442 79.4
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 5.1e-209 731.1 442 78.7
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 5.1e-209 731.1 442 79.0
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 8.7e-209 730.3 442 78.7
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 1.1e-208 729.9 440 80.0
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 1.1e-208 729.9 441 78.5
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 1.5e-208 729.6 442 78.5
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 4.3e-208 728.0 442 78.7
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 2.1e-207 725.7 441 78.9
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 2.1e-207 725.7 442 79.0
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 1.2e-205 719.9 436 79.1
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 6.5e-204 714.1 442 78.7
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 8.4e-204 713.8 438 76.7
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 3.2e-203 711.8 442 76.7
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 5.5e-203 711.1 442 76.9
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.2e-202 709.9 442 77.8
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 1.2e-202 709.9 442 77.8
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 1.6e-202 709.5 445 78.4
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 2.1e-202 709.1 441 77.3
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 7.9e-202 707.2 442 77.4
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.0e-201 706.8 442 77.6
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 3.9e-201 704.9 440 76.8
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 5.1e-201 704.5 443 76.7
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 6.7e-201 704.1 437 77.8
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 8.7e-201 703.7 440 77.7
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 1.5e-200 703.0 442 77.6
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 5.7e-200 701.0 442 75.8
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 7.4e-200 700.7 442 77.4
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 9.7e-200 700.3 442 76.9
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 4.8e-199 698.0 440 75.7
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 8.2e-199 697.2 442 76.9
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 1.1e-198 696.8 442 73.5
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 1.1e-198 696.8 441 74.4
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 9.0e-198 693.7 442 74.9
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.5e-197 693.0 441 75.1
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 2.0e-197 692.6 442 74.4
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 2.6e-197 692.2 442 74.0
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 2.6e-197 692.2 442 76.7
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 7.7e-197 690.6 444 74.5
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 1.0e-196 690.3 440 75.2
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 1.3e-196 689.9 440 76.6
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 1.7e-196 689.5 441 74.6
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.7e-196 689.5 440 74.1
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 8.5e-196 687.2 441 73.7
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 2.5e-195 685.6 442 73.3
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 2.5e-195 685.6 442 74.0
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 1.6e-194 682.9 442 72.4
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 1.5e-192 676.4 442 72.4
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.5e-192 675.6 408 79.2
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 7.4e-192 674.1 437 73.2
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 8.2e-191 670.6 439 74.5
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 1.4e-190 669.8 442 75.1
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 2.4e-190 669.1 442 75.1
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 9.1e-190 667.2 437 73.5
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 1.2e-189 666.8 439 71.5
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 3.4e-189 665.2 442 72.6
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 4.5e-189 664.8 445 72.6
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 7.7e-189 664.1 442 72.4
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 1.0e-188 663.7 442 72.9
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.0e-188 663.7 439 71.8
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 1.7e-188 662.9 437 72.1
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 3.8e-188 661.8 442 71.3
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 5.0e-188 661.4 440 73.6
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 6.5e-188 661.0 442 72.4
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 6.5e-188 661.0 441 71.7
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 1.4e-187 659.8 442 74.2
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 7.2e-187 657.5 440 72.0
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 9.4e-187 657.1 442 72.2
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 1.6e-186 656.4 441 71.9
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 4.7e-186 654.8 442 71.5
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 4.7e-186 654.8 439 71.8
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 6.1e-186 654.4 442 70.6
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 3.9e-185 651.7 441 70.1
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 5.1e-185 651.4 439 70.8
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 6.7e-185 651.0 440 71.1
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 4.4e-184 648.3 411 74.9
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.3e-183 646.7 440 70.0
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.7e-183 646.4 385 80.3
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 1.8e-182 642.9 436 70.4
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 1.8e-182 642.9 436 70.4
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 1.8e-182 642.9 436 70.4
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 2.9e-180 635.6 445 69.7
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 2.6e-176 622.5 445 69.7
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 1.8e-174 616.3 417 71.5
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 2.0e-173 612.8 443 65.9
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 7.7e-173 610.9 441 66.0
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.0e-172 610.5 444 67.1
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 3.8e-172 608.6 440 68.4
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.1e-171 607.1 445 66.3
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.5e-171 606.7 439 66.5
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 9.4e-171 604.0 440 68.2
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 1.6e-170 603.2 443 65.5
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 3.6e-170 602.1 443 63.7
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 3.3e-168 595.5 442 66.1
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 2.8e-167 592.4 444 65.8
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 4.7e-162 575.1 438 66.9
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 4.4e-160 568.5 437 66.4
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 1.4e-158 563.5 351 75.5
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 3.4e-152 542.3 440 65.0
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 3.7e-151 538.9 347 78.1
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 6.6e-148 528.1 318 81.1
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 3.0e-140 502.7 327 73.4
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 1.1e-139 500.7 439 55.6
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.5e-139 500.4 439 57.9
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 6.2e-138 495.0 339 70.2
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 5.4e-134 481.9 439 55.4
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 1.2e-133 480.7 449 53.9
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.6e-130 470.3 297 77.8
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 6.2e-130 468.4 297 77.4
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 4.0e-121 439.1 440 50.7
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 3.8e-111 406.0 380 56.8
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 9.3e-110 401.4 439 48.3
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 1.4e-102 377.5 250 71.6
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 3.2e-102 376.3 242 73.1
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 1.4e-89 334.3 519 41.2
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 4.2e-86 322.8 577 36.4
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 3.2e-78 296.6 464 38.4
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 3.4e-72 276.6 427 40.5
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.8e-60 237.7 147 73.5
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 3.7e-50 203.4 239 49.4
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 1.1e-49 201.8 168 60.7
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 9.8e-43 178.7 309 39.2
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 5.0e-39 166.4 108 77.8
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 2.7e-32 144.1 237 39.7
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 1.3e-31 141.7 117 58.1
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 8.0e-29 132.5 87 67.8
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 8.9e-28 129.0 80 72.5
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 5.6e-22 109.8 68 85.3
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 1.2e-19 102.1 104 55.8
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 1.5e-19 101.7 69 65.2
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 1.5e-14 85.1 55 69.1


User provided reference genes

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